PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0074s0052.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 289aa    MW: 31538.2 Da    PI: 7.7657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0074s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-162370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEdell +++++ G g W+t +++ g+ R++k+c++rw +yl
  Kaladp0074s0052.1.p 23 RGPWTSEEDELLTKCINKEGEGKWRTLPERAGLARCGKSCRLRWMNYL 70
                         89********************************************97 PP
2Myb_DNA-binding46.67.8e-1581121648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Kaladp0074s0052.1.p  81 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNSHL 121
                          89***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.711870IPR017930Myb domain
SuperFamilySSF466897.49E-2919117IPR009057Homeodomain-like
SMARTSM007179.5E-122272IPR001005SANT/Myb domain
PfamPF002493.9E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-202477IPR009057Homeodomain-like
CDDcd001672.10E-102570No hitNo description
PROSITE profilePS5129422.82971125IPR017930Myb domain
SMARTSM007176.0E-1375123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2378126IPR009057Homeodomain-like
CDDcd001671.79E-1181121No hitNo description
PfamPF002491.3E-1381121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRNPSSSVTE KKSSGGRKMG LKRGPWTSEE DELLTKCINK EGEGKWRTLP ERAGLARCGK  60
SCRLRWMNYL RPCVKRGQIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNSH  120
LSKKLISQGI DPKTHKPLVE TSSTRAITKS LGAAKNGRRS ESDNSGSSKM VTTTPPTSSG  180
QNPNMYQHHF GSAVDGLEDD QMMTRGGHGN AAASDAQESA GCYYSAGQCC ETNLHLEDGA  240
DAGGYHVNLQ QSSQGLGNED GIDCKGMLED DGVFSSFLNS LINDDMFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26211255108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594698.13e-88transcription repressor MYB5-like
TrEMBLA0A2C9UER57e-87A0A2C9UER5_MANES; Uncharacterized protein
STRINGcassava4.1_011594m1e-87(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-74myb domain protein 5