PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0074s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 226aa MW: 25314.5 Da PI: 10.2038 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 91.2 | 1.4e-28 | 153 | 209 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VNaKQy++I++RR Rak+e kk + +rkpy+heSRh hA+rR Rg+gGrF Kaladp0074s0017.1.p 153 DGPIFVNAKQYHGIIRRRLYRAKAELVKKS-IGARKPYMHESRHLHAVRRVRGCGGRF 209 57************************9999.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.7E-31 | 151 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.797 | 152 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.5E-21 | 155 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.5E-25 | 155 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 157 | 177 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.5E-21 | 186 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQTVYLKEYE GMSEKTTGHL SSGQTMPWWV AESHSDPAEA FRHLKSSPVE HATAGRQFTL 60 TKSDHSRTLK GAEKDAANQF TISPGGQRTQ QVQASVNIQP TLSDYHTHLE PGYGQAMVYP 120 KYPYGDQSCW AMSTYGPQVQ GRVMLPQNST ADDGPIFVNA KQYHGIIRRR LYRAKAELVK 180 KSIGARKPYM HESRHLHAVR RVRGCGGRFL NTKVSDAGTG RNSMKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-14 | 153 | 217 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 9e-15 | 153 | 210 | 2 | 60 | HAPB protein |
4g92_A | 9e-15 | 153 | 210 | 2 | 60 | HAPB protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119452.1 | 7e-70 | nuclear transcription factor Y subunit A-10-like isoform X2 | ||||
TrEMBL | A0A251N943 | 7e-68 | A0A251N943_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5VS74 | 7e-69 | M5VS74_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_008241076.1 | 4e-69 | (Prunus mume) | ||||
STRING | EMJ04202 | 1e-69 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 5e-38 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0074s0017.1.p |