PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0073s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 49609.4 Da PI: 4.9379 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106 | 4.6e-33 | 59 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+G++F+Ptd+e++ ++L +k+ + + + v ke +i++++P++Lp vk + + +fF+++ k+y+tg+rk+r+++ Kaladp0073s0030.1.p 59 LPRGVKFDPTDQEII-HHLLAKCGIGNlkahpfI---NefiptVNKEDGICYTHPQNLP-GVKLDGSVAHFFHRAIKAYNTGSRKRRKIQ 143 799************.666666666663454332...133331233336**********.666788999******************855 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y ++ k+ekt+Wvmh+y+l Kaladp0073s0030.1.p 144 gdssgDVRWHKTGRTKPVML-DGVQKGCKKIMVLYisPAKGGKAEKTNWVMHQYHL 198 55544778************.99************5534667778*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-39 | 44 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.642 | 59 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-14 | 60 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MSTGPTWLVD GHRIATKIKS AAGASDLGHM KWKSNPCRAC PNCQYIIDNS DVPQDWPGLP 60 RGVKFDPTDQ EIIHHLLAKC GIGNLKAHPF INEFIPTVNK EDGICYTHPQ NLPGVKLDGS 120 VAHFFHRAIK AYNTGSRKRR KIQGDSSGDV RWHKTGRTKP VMLDGVQKGC KKIMVLYISP 180 AKGGKAEKTN WVMHQYHLGT EEDEKDGECV ISKIFYQQQP GKASDGVEQE ISETSNTAVA 240 KVDPVTPRSA IPVPPRTEAR DSDLELVEES ALTQMEPLHQ GLDTDYTGDL DEQNESEAIK 300 IQDQPRAEGH SGEGDAVENN DNPAAEDPSW WEESPFLLNS QQLAEGLAIC DDLLQSQSPG 360 RQGFANPQES KGRPRLADYS RLGPENLKKD LEECQTLEFD PTKIELDALL ELHLSQDIRL 420 SQDFRLSQLE FCSQDSFCAF GGNKVID* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281522.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010647959.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-157 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1J0A0N5 | 0.0 | A0A1J0A0N5_RHOML; NAC | ||||
STRING | POPTR_0008s11550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-159 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0073s0030.1.p |