PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0073s0028.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 388aa    MW: 42827.4 Da    PI: 8.8236
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0073s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-1479127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Kaladp0073s0028.1.p  79 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 127
                          79****9888.8*********3.....5*************************98 PP
2B397.39.5e-31206308194
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+kv tpsdv+k++rlv+pk++ae+h         +    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  Kaladp0073s0028.1.p 206 FEKVVTPSDVGKLNRLVIPKQHAEKHfplntspsaSDAASKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDAVS 295
                          99*************************9999988855556999*********************************************** PP

                          EEE-SSSEE..EE CS
                   B3  82 Fkldgrsefelvv 94 
                          F++++  +++l++
  Kaladp0073s0028.1.p 296 FERSNGADRQLYI 308
                          **87666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.56E-2679134No hitNo description
SuperFamilySSF541711.9E-1779135IPR016177DNA-binding domain
PfamPF008475.4E-979127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2180135IPR001471AP2/ERF domain
SMARTSM003802.5E-2980141IPR001471AP2/ERF domain
PROSITE profilePS5103220.15280135IPR001471AP2/ERF domain
SuperFamilySSF1019363.4E-30201308IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-38201311IPR015300DNA-binding pseudobarrel domain
CDDcd100177.01E-28205301No hitNo description
PROSITE profilePS5086314.325206314IPR003340B3 DNA binding domain
SMARTSM010193.1E-24206314IPR003340B3 DNA binding domain
PfamPF023621.8E-28206309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDLLQIVGST FKIGMNMDGS CIDESSATSD STSAAVDMVV PRKSATETTE KLTRMGSGAS  60
VITDSAIGVE AESRKLPSSK FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDT  120
AAQRFRGRDA VTNFKPLAAE TVDRDAVESA FLNSRSKAEI VDMLRKHTYA EELEQSRRIV  180
GLDNGSGEVG GRAGCGHPVG PKELLFEKVV TPSDVGKLNR LVIPKQHAEK HFPLNTSPSA  240
SDAASKGVLL NFEDGGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLLA GDAVSFERSN  300
GADRQLYIDM KHKNGQLSDL QLLAHSTIRL FGVNIIKDPI CNIIMKHMNN PDEDNKRMRS  360
GNEEKDLFGF QCMKKQRASP RDIVAYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5420332011122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281709.21e-152PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-134RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLF6HFQ21e-151F6HFQ2_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03070.t011e-152(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-133related to ABI3/VP1 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]