PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0072s0078.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21748.9 Da PI: 7.5782 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.8e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C + C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++ Kaladp0072s0078.1.p 2 SCNGCRVLRKGCRDTCILRPCLewidsPESQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGSGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 +++++++e++l++ Kaladp0072s0078.1.p 92 HVCEVAVETVLQGG 105 *******9998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.259 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MSCNGCRVLR KGCRDTCILR PCLEWIDSPE SQGHATIFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLGSGN WHVCEVAVET VLQGGKLQPL RDLARCSPDS 120 DEASEVAFQP LNSQMVKRMR RDMDKSGDVD LSLTMSCLAP DSGRSGSPSM DSEKSGTMRS 180 DGNGGRRRVD REVKLLDLFC * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626676.1 | 2e-76 | PREDICTED: LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 2e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1R3K433 | 3e-77 | A0A1R3K433_9ROSI; Uncharacterized protein | ||||
STRING | XP_009626676.1 | 8e-76 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-74 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0072s0078.1.p |