PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0072s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26196.3 Da PI: 8.1465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.4 | 2.2e-30 | 12 | 88 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ewyfFs rd+kyatg r+nrat sgyWkatgkd+++l+ ++ + g++ktLvfyk+rap+g kt W+mhe+rle Kaladp0072s0040.1.p 12 NATEWYFFSFRDRKYATGFRTNRATMSGYWKATGKDRTILDPsDRCVAGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 88 567**************************************9666779**************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.267 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-37 | 10 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-14 | 15 | 87 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MCKNNAEVGK LNATEWYFFS FRDRKYATGF RTNRATMSGY WKATGKDRTI LDPSDRCVAG 60 MRKTLVFYKN RAPNGIKTGW IMHEFRLETP HFPPKEDWVL CRVFHKAKIS ASSNHGCCEP 120 HAAMLPCVIS QNQISSLSST QNGNMVSNHK ALLNNHNNHY GAVFKFGAQE EKNPATAASS 180 VTEMNSVDDG RGEGRGSYDF LWGINLEEIN SLAPSDEGGT LQDHQMDANS LSFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-27 | 15 | 106 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-27 | 15 | 106 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-27 | 15 | 106 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-27 | 15 | 106 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-27 | 15 | 106 | 75 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-27 | 15 | 106 | 72 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-27 | 15 | 106 | 72 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468474.1 | 6e-73 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q84TE6 | 1e-41 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A072VLL3 | 1e-71 | A0A072VLL3_MEDTR; NAC transcription factor-like protein | ||||
STRING | EOX94424 | 5e-69 | (Theobroma cacao) | ||||
STRING | XP_004493788.1 | 7e-69 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-60 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0072s0040.1.p |