PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0072s0011.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 511aa    MW: 56567.3 Da    PI: 6.0087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0072s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.6e-4841312128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          p+G+rFhPtd+elv++yL+ k +g++ ++ + i+evd++k+ePw++p + + +++++ewyfF +rd+ky +++r+nratk+g+Wk tg+d
  Kaladp0072s0011.1.p   4 PVGYRFHPTDQELVNHYLRLKNQGSERDV-SNIREVDVCKWEPWEIPgHlCSDSDDQEWYFFGRRDSKYGKSTRSNRATKDGFWKPTGRD 92 
                          89************************999.77***************6346677899********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++++++l+g+kktLvfykgra+++++t+Wvmheyr+
  Kaladp0072s0011.1.p  93 RFIKTSSKKLIGTKKTLVFYKGRAQRAHRTRWVMHEYRA 131
                          *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-492143IPR003441NAC domain
PROSITE profilePS5100547.5583149IPR003441NAC domain
PfamPF023657.0E-264130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSKPVGYRFH PTDQELVNHY LRLKNQGSER DVSNIREVDV CKWEPWEIPG HLCSDSDDQE  60
WYFFGRRDSK YGKSTRSNRA TKDGFWKPTG RDRFIKTSSK KLIGTKKTLV FYKGRAQRAH  120
RTRWVMHEYR ASADKHNPQA FVLYLLKKKE DENPEISNSD DKSSPSVSLL INNNAPSYSP  180
STPTLLRSSG NFSSSDQTRV NQNWKEQEVS SHAQNVHSPC LEDDIDFQAF ERFFDGQPPT  240
WDGLDRMLPA IPLSGVYPNQ GPTHMTARYI NVSSNDHGVT QFSNSKSRQE AVHNIDDVVS  300
SVFTLNTLTL DAESGTETDN DVPQSLFDEE AVYGGSAYLS DSESSNAEFY NDMILAHEVS  360
LSTNNSGHFE LQAGEDGSIK RIASGRIHGS ANNPRTGTNS EVPAQASSKK ERSYVPPKKL  420
ESKIVEAVSD DDSSEGPAKS SAILEVSGNE SGGAVGSLGR EGRGTGFMHY AENPRVNNGT  480
TPPSNYILNL IMGIFLTGVI MGEVLFGLVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-32113013139Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.17e-51NAC 014