PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0071s0350.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 167aa MW: 18966.2 Da PI: 9.1535 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.4 | 7.6e-06 | 18 | 30 | 44 | 56 |
HHHHHHHHHHHHH CS Homeobox 44 VkvWFqNrRakek 56 V +WFqNrRa+ k Kaladp0071s0350.1.p 18 VAIWFQNRRARLK 30 99*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 8.568 | 1 | 32 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.1E-5 | 6 | 42 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 17 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF02183 | 3.7E-16 | 32 | 72 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF03670 | 3.3E-5 | 35 | 87 | IPR022788 | Uncharacterised protein family UPF0184 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKTKKKKFSD EQIRSLEVAI WFQNRRARLK PKQIEREYDS LKASYDALAC KFESLKKENQ 60 SLNSQLRTLI EKFERVRMDI NGRMSEQTNA SASTEKVGDQ QQGGGSGNNG EQKLSVVEKL 120 SGSGNIPMEM MYSSPFASSA NSWSSEYSCF LDQSKSCGSS QWWEFW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 32 | RRARLKPKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-17 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0071s0350.1.p |