PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0071s0233.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23325.4 Da PI: 6.8613 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.1 | 3e-43 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da+ss+vyeA ar+rdPvyG++g+i++lq+ql++l Kaladp0071s0233.1.p 35 PCAACKILRRRCAEKCVLAPYFPPSEPHKFTIAHRVFGASNIIKFLQDLPEPQRADAISSMVYEAGARIRDPVYGCAGTIFQLQKQLNEL 124 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +aela++++e Kaladp0071s0233.1.p 125 QAELAKAQAE 134 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.304 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-43 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
CDD | cd00890 | 7.72E-5 | 116 | 179 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MACHGDQAAV TGPRSVSHGE DSRAKCPRSG AVIGPCAACK ILRRRCAEKC VLAPYFPPSE 60 PHKFTIAHRV FGASNIIKFL QDLPEPQRAD AISSMVYEAG ARIRDPVYGC AGTIFQLQKQ 120 LNELQAELAK AQAEMVTMQC QQAQLVQTLF AMSNAPSSPE SSPDQQSSFC KGLIIGPSRS 180 PDSFRSNSSS LLEDDRPNGN PNSMWDMEET MCWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 27 | 155 | 6 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 27 | 155 | 6 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024160819.1 | 2e-74 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-67 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 7e-67 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2P6QHT3 | 5e-73 | A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_007150227.1 | 1e-72 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-57 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0071s0233.1.p |