PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0107.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 390aa MW: 43620.9 Da PI: 7.3841

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0107.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	4e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk +++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+ Kaladp0071s0107.1.p 14 MLPGFRFHPTDEELVAFYLKRKIQQRPLAI-ELIKQLDIYKHDPWDLPKLGATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 102 579**********************999.89***********87778999****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Kaladp0071s0107.1.p 103 PIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-57	14	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.632	14	172	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDDRNDGDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP 60 KLGATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLVDSVHP KRFIDKTTTA NDAWAICRIF KKTNTTAQRA 180 ASHSWVSPAS PDYLMPAGGQ SSQFSSTERS IISMTPKPSP NFPFSYDTFL HQQQSCGTAF 240 SPPDLGYYKS INSTSHIPST KVEPSILNNL VFPPHDNSGI STMLFNISSS LTTAEELSIA 300 AASDSSEFTD FPSSLPQGLL HNNEHHLSEL LKHENGSYGG ANIDDAWNLL HPGFGFNVNN 360 PPSEASKSNL VWDSSPCPSE MSTNYKCFN*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDDRNDGDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP  60
KLGATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLVDSVHP KRFIDKTTTA NDAWAICRIF KKTNTTAQRA  180
ASHSWVSPAS PDYLMPAGGQ SSQFSSTERS IISMTPKPSP NFPFSYDTFL HQQQSCGTAF  240
SPPDLGYYKS INSTSHIPST KVEPSILNNL VFPPHDNSGI STMLFNISSS LTTAEELSIA  300
AASDSSEFTD FPSSLPQGLL HNNEHHLSEL LKHENGSYGG ANIDDAWNLL HPGFGFNVNN  360
PPSEASKSNL VWDSSPCPSE MSTNYKCFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_B	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_C	1e-53	16	179	22	174	NAC domain-containing protein 19
3swm_D	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_A	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_B	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_C	1e-53	16	179	22	174	NAC domain-containing protein 19
3swp_D	1e-53	16	179	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270334.1	1e-144	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	1e-107	FEZ_ARATH; Protein FEZ
TrEMBL	F6HPC3	1e-142	F6HPC3_VITVI; Uncharacterized protein
STRING	VIT_01s0026g02360.t01	1e-143	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-109	NAC family protein

Link Out ? help Back to Top
Phytozome	Kaladp0071s0107.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]