PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0071s0099.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 274aa MW: 30472.2 Da PI: 7.9182 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.1 | 8.1e-33 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFvea+++LGG++kAtPk++++lmk++gLtl+h+kSHLQk+Rl Kaladp0071s0099.1.p 17 KPRLKWTPELHSRFVEAIAKLGGPDKATPKSVMKLMKIPGLTLYHLKSHLQKFRL 71 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.449 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-30 | 15 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-23 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-8 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-20 | 110 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 274 aa Download sequence Send to blast |
MGLPDQNTSL ILSTDAKPRL KWTPELHSRF VEAIAKLGGP DKATPKSVMK LMKIPGLTLY 60 HLKSHLQKFR LGKSQLSETC PDSRPEDRGQ IHFDQDDHGA SLKQINENFK IAQALQLQME 120 VQTQLHTQIE VQRRLQLRIE AQGKYLQSVL KKAQESLAGY KNTSQCELSE LVSMVNSSCQ 180 NSSALSDLTE TESCRLRDLA KGLARCARSS DASPTSSSSP AQEQQDSLNH QLNTRKRNGS 240 TALDADDQQT AKRPRLSLQL SLDLNSEYED QSD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-21 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-21 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-21 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-21 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-21 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890537.1 | 1e-88 | myb family transcription factor PHL8-like isoform X3 | ||||
Swissprot | F4I274 | 2e-62 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A2I4DJV4 | 1e-82 | A0A2I4DJV4_JUGRE; myb family transcription factor PHL8-like | ||||
STRING | XP_010108678.1 | 1e-82 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-64 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0071s0099.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|