PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0078.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 412aa    MW: 45177 Da    PI: 4.4357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-18105149250
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaar 50 
                          +y GVr ++ +grWvAeI+d     + + r++lg+++taeeAa+a+++a+
  Kaladp0071s0078.1.p 105 RYIGVRKRP-SGRWVAEIKDtR---N-SIRVWLGTYDTAEEAARAYDEAA 149
                          799******.7*********33...2.5*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-23104153No hitNo description
Gene3DG3DSA:3.30.730.101.8E-21105150IPR001471AP2/ERF domain
SMARTSM003806.8E-22105160IPR001471AP2/ERF domain
PROSITE profilePS5103217.833105150IPR001471AP2/ERF domain
PfamPF008471.4E-13105149IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16105153IPR016177DNA-binding domain
PRINTSPR003675.6E-8106117IPR001471AP2/ERF domain
PRINTSPR003675.6E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGEEGGYRML IFSFNLFAVT GAIGIFLLLL VNSLGNQLEH FGLSHLSNDS LNSFSVSNVN  60
NGLKRDGDVL HKIKAKNPPF VAYTSKFYTQ IWSVALGGAG QVRKRYIGVR KRPSGRWVAE  120
IKDTRNSIRV WLGTYDTAEE AARAYDEAAF INFWPCAPDS PDCTSALSSR ITGLLRARLR  180
VRNRSSGCSS SGYIPSHQQD NTVEVAESEP LGIEVKAGHT ALDTVYNNLE DCTITEDCEI  240
STSSYSLVSG EVAGLEAISN NRETSQLSCH GTNWFASFYD DPESGEASKA EEENLVYTRF  300
ADFEFADSMG SSSSVYCSPF ELPEEMSEPL EPPPPITNIM GPTTTLSETI NQMQYERKFS  360
ATLYAYNGVS DCLRLQVSGH SNDASSDQFP CNTNCYTTFQ ETLTGLEEDG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1498150760Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-09related to AP2 11