PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0070s0070.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 512aa MW: 56442.5 Da PI: 8.3849

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0070s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	449	498	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+isl++l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki + Kaladp0070s0070.1.p 449 EKTISLDVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKILK 498 799********************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.187	438	511	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	451	497	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MKEKMTQALR YFKESTEQHV LAQVWAPVKN GGRYVLTTSG QPFVLDPHSN GLNRYRMVSL 60 MYMFSVDEES DGELGLPGRV FRQKLPEWTP NVQYYSSREY SRLDHALHYN VQGTLALPVF 120 DSSGQTCVGV VELILTSQKI NYAPEVDKVC KALEAVNLKS SNILDHPKPQ ICNKGRQKAL 180 SEILEVLSVV CESLKLPLAQ TWVPCRHRNV LADGGGLRKS CSSFDGSCMG QVCMSASDVT 240 FYVVDAHLWG FRDACAEHHL QRGQGVAGRA FLTQSSCFCG DITQFSKTEY PLVHYARLFG 300 VKSSFAICLC SSLTGNDEYI LEFFLPPSLI DAGDQQALLN SLLETMKLHF SSLRVASGRN 360 LGEDMIQIIE GSADENLLES VRRSHSTSPP APAPDATNDR ETGNKVSSAK LVSEKTNGSN 420 NAINTAAVGG DLVGNTVTKK PERKRGKTEK TISLDVLQQY FSGSLKDAAK SLGVCPTTMK 480 RICRQHGISR WPSRKILKHA YLYCVPLLKV C*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MKEKMTQALR YFKESTEQHV LAQVWAPVKN GGRYVLTTSG QPFVLDPHSN GLNRYRMVSL  60
MYMFSVDEES DGELGLPGRV FRQKLPEWTP NVQYYSSREY SRLDHALHYN VQGTLALPVF  120
DSSGQTCVGV VELILTSQKI NYAPEVDKVC KALEAVNLKS SNILDHPKPQ ICNKGRQKAL  180
SEILEVLSVV CESLKLPLAQ TWVPCRHRNV LADGGGLRKS CSSFDGSCMG QVCMSASDVT  240
FYVVDAHLWG FRDACAEHHL QRGQGVAGRA FLTQSSCFCG DITQFSKTEY PLVHYARLFG  300
VKSSFAICLC SSLTGNDEYI LEFFLPPSLI DAGDQQALLN SLLETMKLHF SSLRVASGRN  360
LGEDMIQIIE GSADENLLES VRRSHSTSPP APAPDATNDR ETGNKVSSAK LVSEKTNGSN  420
NAINTAAVGG DLVGNTVTKK PERKRGKTEK TISLDVLQQY FSGSLKDAAK SLGVCPTTMK  480
RICRQHGISR WPSRKILKHA YLYCVPLLKV C*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973247.1	0.0	PREDICTED: protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A1R3IB46	0.0	A0A1R3IB46_COCAP; Phox/Bem1p
TrEMBL	A0A1R3K743	0.0	A0A1R3K743_9ROSI; Phox/Bem1p
STRING	EOY25090	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0070s0070.1.p

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]