PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0019.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 280aa    MW: 31751.5 Da    PI: 6.513
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2097157257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+++t+ ql++Le+ F k n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  Kaladp0070s0019.1.p  97 RQRWAPTPVQLQILENIFDKgNGTPSKQKIKDITSELskhgQVSETNVYNWFQNRRARAKR 157
                          89*****************99**************************************97 PP
2Wus_type_Homeobox99.52.4e-3296159265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ar+RW+Ptp Q++iLe+++++G  tP+k++i++it+eL+++G+++++NV++WFQNr+aR ++kq
  Kaladp0070s0019.1.p  96 ARQRWAPTPVQLQILENIFDKGNGTPSKQKIKDITSELSKHGQVSETNVYNWFQNRRARAKRKQ 159
                          689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-1791160IPR009057Homeodomain-like
PROSITE profilePS5007114.6993158IPR001356Homeobox domain
SMARTSM003895.8E-1495162IPR001356Homeobox domain
SuperFamilySSF466895.56E-1896159IPR009057Homeodomain-like
PfamPF000462.1E-1897157IPR001356Homeobox domain
CDDcd000864.12E-1397159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMEWEKHHHH RRGVDAPVTE ADARLMMQEQ RQQQLVVMTD DQIEILRKQI AVYTILCDKL  60
VEMHRSLSSQ RDLSGVGIGN SYCDPLMISS SHKISARQRW APTPVQLQIL ENIFDKGNGT  120
PSKQKIKDIT SELSKHGQVS ETNVYNWFQN RRARAKRKQT VPATSNSETD GNQELDSSKE  180
KETKGEIFQS RPIPCSLNDD SRCRSSGMSS DLHSFDPLSS KAEAMFSSED ELKPPTTLGD  240
MSFYDSILSN RRIDQLSGRL ETEGGYHPYH QTDEYSMLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRARAKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893569.11e-101WUSCHEL-related homeobox 13
SwissprotQ5QMM33e-78WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A291R9783e-99A0A291R978_9ERIC; Putative WOX13-like homeobox transcription factor
STRINGPGSC0003DMT4000039801e-100(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.15e-63WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]