PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0069s0095.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 304aa MW: 34179.6 Da PI: 6.3709

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0069s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.6	1.1e-48	11	153	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Ptdeelv++yL kkv ++ + + e+d+++vePw+Lp+ +k + +ewyfFs rd+kyatg r+ Kaladp0069s0095.1.p 11 LPPGFRFYPTDEELVCHYLSKKVIMESdtavayE---DevealknkgmSLVEIDLHTVEPWQLPEVAKLNATEWYFFSFRDRKYATGFRT 97 79******************988885565540...15556667764599*********88888999************** PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat+sgyWkatgkd+++l+ ++++vg++ktLvfyk+rap+g kt W+mhe+rle Kaladp0069s0095.1.p 98 NRATTSGYWKATGKDRTILDPsTHTVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 153 ****************966778*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-56	8	171	IPR003441	NAC domain
PROSITE profile	PS51005	54.615	11	171	IPR003441	NAC domain
Pfam	PF02365	2.4E-27	12	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MMGLKEVGAR LPPGFRFYPT DEELVCHYLS KKVIMESDTA VAYEDEVEAL KNKGMSLVEI 60 DLHTVEPWQL PEVAKLNATE WYFFSFRDRK YATGFRTNRA TTSGYWKATG KDRTILDPST 120 HTVVGMRKTL VFYKNRAPNG IKTGWIMHEF RLETPHLPPK EDWVLCRVFH KTKISAEHHN 180 CSDNLSCCQP NVAMLPCVIS HNQISSFSSK QNSNMVSNHM GLLNNSSHHN AIFKFGVQPE 240 DKNPATAVSS VTEMTSVDGG GGEGRGDYDF LWDMNLEEIN SLGPSNEQGT LQDQMDANSL 300 SFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	2	171	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	2	171	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	2	171	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	2	171	4	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	2	171	7	168	NAC domain-containing protein 19
3swm_B	3e-45	2	171	7	168	NAC domain-containing protein 19
3swm_C	3e-45	2	171	7	168	NAC domain-containing protein 19
3swm_D	3e-45	2	171	7	168	NAC domain-containing protein 19
3swp_A	3e-45	2	171	7	168	NAC domain-containing protein 19
3swp_B	3e-45	2	171	7	168	NAC domain-containing protein 19
3swp_C	3e-45	2	171	7	168	NAC domain-containing protein 19
3swp_D	3e-45	2	171	7	168	NAC domain-containing protein 19
4dul_A	2e-45	2	171	4	165	NAC domain-containing protein 19
4dul_B	2e-45	2	171	4	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF874841	1e-33	KF874841.1 Boehmeria nivea NAC domain-containing protein (NAC17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907574.1	1e-107	NAC domain-containing protein 21/22-like
TrEMBL	A0A061DNM9	1e-104	A0A061DNM9_THECC; NAC domain protein, IPR003441
TrEMBL	A0A1S2XUB5	1e-104	A0A1S2XUB5_CICAR; NAC domain-containing protein 21/22
STRING	EOX94424	1e-105	(Theobroma cacao)
STRING	XP_004493788.1	1e-105	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-92	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Kaladp0069s0095.1.p