PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0067s0210.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 684aa MW: 76106.9 Da PI: 5.6917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0067s0210.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	75	207	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgk Kaladp0067s0210.1.p 75 LPLGFRFRPTDEELINHYLRLKINGRDSEV-QVIPEIDVCRWEPWDLPdlSVIKTGDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGK 163 699**********************999.99**********96448888999**************************** PP NAM 89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++++k +++l+g+kktLvfy+grap+ge+t+W+mheyr+ Kaladp0067s0210.1.p 164 DRTIKAKklpaTTNLIGMKKTLVFYRGRAPRGERTHWIMHEYRA 207 **988888888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-61	62	230	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	75	230	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	76	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MMMIKRSTEE RKSKIEKSKS KEIRKRRRRR RRNKVVGKAE SIIARRDYSV SETTSELGFC 60 CWADRIMAIL SVEALPLGFR FRPTDEELIN HYLRLKINGR DSEVQVIPEI DVCRWEPWDL 120 PDLSVIKTGD PEWFFFCPRD RKYPNGHRSN RATEAGYWKA TGKDRTIKAK KLPATTNLIG 180 MKKTLVFYRG RAPRGERTHW IMHEYRATEK DLDGTGPGQG AFVLCRLFKK SDETIDVPNY 240 DEVDNTGSSP ATTRSSPDDT SSDIVQEAGA PERKQPEGIK RWLTDKADKM TDSFAGPVDS 300 CCSNLASDSE DHAVERTAPE THPLVGINPE VYESNNDLLD SHEFDSFGSL IQKDLPYVGS 360 PFASDFGFRY DVFQDSTGEQ DIFLTELLDE VFNDFSCEES ASQKNSAIGS ESYLSDQLCV 420 SPYGQSDAYG IGNGIYGNKD AEMSQLRYDL GVGGPLWSNE SEGGKSNMQI PAYPGYFQAD 480 RSFCGGVHIT SSVELPESAT VLPDKSFRSE ESAGRKTSAN DGAKTGIKIR TRQPQRQPYS 540 DSSQQQGIAP RRIRLQIRNT GNALGETMKN EGETYVEPGI SNDALAIERK ASTTEVEVET 600 SLTASEKKSE RSDLIQEQSS SSLRQRVKQS GEGNTPLVTS QPRQEIAAKN NPGSLKAVFA 660 GVALFTMICL TIVLGVAGWY STQ*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MMMIKRSTEE RKSKIEKSKS KEIRKRRRRR RRNKVVGKAE SIIARRDYSV SETTSELGFC  60
CWADRIMAIL SVEALPLGFR FRPTDEELIN HYLRLKINGR DSEVQVIPEI DVCRWEPWDL  120
PDLSVIKTGD PEWFFFCPRD RKYPNGHRSN RATEAGYWKA TGKDRTIKAK KLPATTNLIG  180
MKKTLVFYRG RAPRGERTHW IMHEYRATEK DLDGTGPGQG AFVLCRLFKK SDETIDVPNY  240
DEVDNTGSSP ATTRSSPDDT SSDIVQEAGA PERKQPEGIK RWLTDKADKM TDSFAGPVDS  300
CCSNLASDSE DHAVERTAPE THPLVGINPE VYESNNDLLD SHEFDSFGSL IQKDLPYVGS  360
PFASDFGFRY DVFQDSTGEQ DIFLTELLDE VFNDFSCEES ASQKNSAIGS ESYLSDQLCV  420
SPYGQSDAYG IGNGIYGNKD AEMSQLRYDL GVGGPLWSNE SEGGKSNMQI PAYPGYFQAD  480
RSFCGGVHIT SSVELPESAT VLPDKSFRSE ESAGRKTSAN DGAKTGIKIR TRQPQRQPYS  540
DSSQQQGIAP RRIRLQIRNT GNALGETMKN EGETYVEPGI SNDALAIERK ASTTEVEVET  600
SLTASEKKSE RSDLIQEQSS SSLRQRVKQS GEGNTPLVTS QPRQEIAAKN NPGSLKAVFA  660
GVALFTMICL TIVLGVAGWY STQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-45	70	230	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-45	70	230	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-45	70	230	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-45	70	230	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	70	230	15	168	NAC domain-containing protein 19
3swm_B	3e-45	70	230	15	168	NAC domain-containing protein 19
3swm_C	3e-45	70	230	15	168	NAC domain-containing protein 19
3swm_D	3e-45	70	230	15	168	NAC domain-containing protein 19
3swp_A	3e-45	70	230	15	168	NAC domain-containing protein 19
3swp_B	3e-45	70	230	15	168	NAC domain-containing protein 19
3swp_C	3e-45	70	230	15	168	NAC domain-containing protein 19
3swp_D	3e-45	70	230	15	168	NAC domain-containing protein 19
4dul_A	3e-45	70	230	12	165	NAC domain-containing protein 19
4dul_B	3e-45	70	230	12	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	27	RKRRR
2	23	30	RKRRRRRR
3	23	31	RKRRRRRRR
4	24	29	KRRRRR
5	25	31	RRRRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023927949.1	1e-175	protein NTM1-like 9
TrEMBL	R4NEW2	1e-172	R4NEW2_JATCU; NAC transcription factor 055
STRING	XP_008360722.1	1e-163	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-121	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Kaladp0067s0210.1.p