PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0067s0079.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 26042.9 Da PI: 9.0434 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 62 | 109 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR+riN +++Lr l+P+ s K++Ka+iL +++ ++ L Kaladp0067s0079.4.p 62 KNHSDAERRRRERINAHLATLRGLVPST----SDKMDKAAILAEVITQVRRL 109 58*************************9....8**********999776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-14 | 59 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.888 | 59 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-14 | 62 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 62 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-11 | 62 | 109 | No hit | No description |
SMART | SM00353 | 2.0E-11 | 65 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEFQITCGSG FGGGFDQFLL QGYCDQSSKA LVLDCERGEL VKAAGVLGKK GVSPAKSAEA 60 LKNHSDAERR RRERINAHLA TLRGLVPSTS DKMDKAAILA EVITQVRRLK KKAAEAAAGL 120 LIPLDADEVR VQAVEDQAGE GTTLCFKASI CCGYRPDLLP DLKLALSTLQ VSTQQMEMST 180 LGGRVKNEFV FSALRDGKLA KADEEKAIAA SIHGALSSVL DKAPPLQPYS PQTASQNKKR 240 KLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 72 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025402.1 | 1e-70 | PREDICTED: putative transcription factor bHLH107 | ||||
TrEMBL | A0A061GLQ3 | 2e-69 | A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 | ||||
STRING | VIT_14s0068g01580.t01 | 5e-66 | (Vitis vinifera) | ||||
STRING | XP_004295576.1 | 1e-65 | (Fragaria vesca) | ||||
STRING | XP_010103039.1 | 6e-66 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0067s0079.4.p |