PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0067s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 1349aa MW: 151145 Da PI: 5.5694 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 23 | 78 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++++++yps++ r eL++kl+Lt+rq ++WF+ rR k+kk Kaladp0067s0040.2.p 23 PKRQMKTPFQLETLERAYAEDMYPSEAVRLELSEKLKLTDRQLQMWFCHRRLKDKK 78 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 4 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-16 | 15 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.001 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-18 | 21 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-16 | 23 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.33E-15 | 24 | 78 | No hit | No description |
SMART | SM00571 | 2.7E-20 | 509 | 568 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.521 | 509 | 568 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.7E-16 | 510 | 565 | IPR018501 | DDT domain |
Pfam | PF05066 | 3.5E-14 | 692 | 759 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.7E-9 | 900 | 943 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.3E-15 | 1056 | 1128 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1349 aa Download sequence Send to blast |
MESGSEGENN EFGAERHGGG SKPKRQMKTP FQLETLERAY AEDMYPSEAV RLELSEKLKL 60 TDRQLQMWFC HRRLKDKKGA PPSTPAKKAT KKPVAEPPPA SPEELMDVGD QFSEQGSGSG 120 PDSDSDMESS PASYRETRNL SSLQYVNSPW GHESPQTIFE RRIVAAIEQQ LGESLREDGP 180 ILGIEFESPP PDAFTSPPEA RSGHRRYGSP LDREGYQHSG SRSKKSLAAY DGAEATQFYD 240 YTFESRSSSI PNFTSVQGHS KMPKQGRKVA PAVMDYEFTP RSDRFLETDA DNLFDGQTSY 300 GAESHHAGSG GKNLNVDVLR KDKKRKAEET KTLREADEKR IRKELEKQEI LRQKREEQLR 360 KEMEKVDRER KKEEERLMRE KQREEERILR EEKRERERRE KFLQRESLKA ERLRQKEELR 420 KEREALRLKA QLEKATARRI IRESMGYIED ERLELMELAV SSKGLESIAA LDYDSLQGLE 480 SFRDSLMEYP PKSVKLKKPF GIQPWLDSDE NIGNLLMVWR FFTTFADVLE LWPFTLDEFV 540 QAFHDYDSRL LGEMHVSLLK LMVKDIEDAA RAPQMASGTS QAAAVNPEGG HPHIIEGAYA 600 WGFDVRNWKQ HLNASTWPEI LRQLALSAGF GPLLKKKKTA KVESLDDIKE AKGSEDVVSI 660 LRNGSAAQNA IVKMQHRGLA LPRKPRHRLT PGTVKFAAFH ILSLEGSDGL TITELAERIQ 720 KYGLRDLSSS KKPEASIGVA LTRDTTLFER VAPSTYCVRP AYRKDPADAE SVLAAAKEKL 780 QALGNANLPG EDVDGVERDE DSECDGAADK ADELGTLSLV NEIGMAFDDE PGCLGNGNDN 840 SSDDGVINIS NEPDKESPFI SNNRTDMNGH GLSTDMDVAG MDMHRRNPDE ESLEVDESRS 900 GESWVQGLAE GDYSALSIEE RLNALVALIG LANEGNTLRA VLEGRLEAAN ALKKQMWAEA 960 ELDKKRAKDG ILTANPKPDA DVKPGNGGYQ SPMLVDEITE TGNNAGSLAN GNIPAIQDAF 1020 SNAEFASEQH KYSVEKSRIQ LKSLISHRAE ELYTYRHLPL GQDRRHNRYW QFAASASKHD 1080 PGTGRIFVES QDGHWRLIDT AESFDALLSS LDTRGVRESN LQHMLKRIES SFKGNLETNS 1140 SQAVKCGSRD TNSSPDCPSD ADSPRSMICA SAGSPECSSS FRIELGRTSV ERMSAFRKYL 1200 EFEKWAWREC FELETLCNLK YGERRCDPLL GHCDLCRDMY LYEDPHSHSC LQKPKNSDDD 1260 MLECDEHENG LVQYSHLPLG VRLLKGLLSL VEVRKSFHPV GRSSIFLGRR APEGVGHEAL 1320 CVFLDQGSLQ GLGFLGSCRQ ARLSIAKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023914496.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X1 | ||||
Refseq | XP_023914497.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
TrEMBL | A0A2N9G746 | 0.0 | A0A2N9G746_FAGSY; Uncharacterized protein | ||||
STRING | XP_002509429.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0067s0040.2.p |