PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0162.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-PHD
Protein Properties Length: 1036aa    MW: 111936 Da    PI: 6.0475
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.34.7e-12653703252
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          ++R  + +  ++ L e+F+kn+yp ++ +e LA++lg++  +V  WF N R
  Kaladp0062s0162.1.p 653 SSRNMLGEAATQKLAEAFQKNQYPERAVKENLANELGIPYPKVDKWFGNAR 703
                          6788888999***************************************99 PP
2PHD41.82.4e-14281336151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C +Cg+    +++++vlCd +C+++fH+ Cl+++l +e++p +   wlC+ C++k
  Kaladp0062s0162.1.p 281 YCTICGSkdLSADNDIVLCDgECNRAFHQLCLKPPLLTEDIPPDdqGWLCPGCDCK 336
                          7******77677********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.35E-13271339IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.7E-13278335IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.19279336IPR019787Zinc finger, PHD-finger
PfamPF006281.8E-11281336IPR019787Zinc finger, PHD-finger
SMARTSM002497.0E-11281334IPR001965Zinc finger, PHD-type
CDDcd155042.68E-26281333No hitNo description
PROSITE patternPS013590282333IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.1E-11638703IPR009057Homeodomain-like
PROSITE profilePS5007112.309649709IPR001356Homeobox domain
SuperFamilySSF466891.75E-10649706IPR009057Homeodomain-like
SMARTSM003891.3E-8651713IPR001356Homeobox domain
CDDcd000867.75E-9652703No hitNo description
PfamPF000461.3E-9653703IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MGKSEDTSQA KPDEPMQENG FLNDEVEGTS SKVAPNLVGR SDTSDADATG QPTEDHNKSS  60
KSNGEGLSSL SPDEIKQIVA NFLGTVSADN SIKGLDGEVP ADHSINDYGF SKYKSRFSSG  120
KKKKTSAKLS RKKITGSDSQ RNRTLRSRGR SEVYVQNTDA ENAHSTPLAS CSTERRRKKK  180
KILRENSDDV FTKIRKQVRY ILNKVRYEQN LIDAYGGEGW KGLSLDKLKP ERELQRASSE  240
IIRCKLRLRD LFQRLDALCD EGSYPRSMFD SEGLLDTEDI YCTICGSKDL SADNDIVLCD  300
GECNRAFHQL CLKPPLLTED IPPDDQGWLC PGCDCKFDCT ELLNDSLGTD LSMKHNWTCV  360
FPEAAAAAAA AGANLQDEIL GLPSDDSGDN DFDPDHTDVD EKVEEYKSEE GGESGGEGST  420
SDESDFTSAS EDLGDFVNEG QLNGNPLDNS DEEEDDDYDP DAPDPDEQIK EESSSSDFTS  480
DSEDFVPEVD NVTSKTNGSS ELAMLETEQE SPAPGSKKRD IERLDYKKLY DETYGNASSD  540
SSDDEEWTEV GPSRKRKTKD QRVDSTLPSK NVEAAADKSD DEEEWADVGS SRKRKNKNRR  600
VDSALSSKNI EASLDDKQSA DEERKLQEAE HSTQKRSRKK LKSSAENGSA SKSSRNMLGE  660
AATQKLAEAF QKNQYPERAV KENLANELGI PYPKVDKWFG NARWSFNHPL HTRTVSKSDI  720
AKKSPSQATP GSKADITNNS SNSHPSQNLS DANATANDSP VKPSSPLKPS STRALANKSP  780
SQVISGRKAV INNNSSNSHP SQNLSNGKTT GNVSPVKTSA PLKPSSTQAV GKRGQSQNLP  840
SPKSHAAGTT SQVDASKSPP PQSSKRLSGR HQETVTSYFS KAEANKPSTI NTEGSADAVG  900
SSKLKATNPT PNSKQRGKKA VPSSEKEPKA PCAPAPNKAT TPAANLKQRG EKSVSSSEKV  960
PAAPSAPAPI VLAQKSPSLA AASRQNKSPT PKSRKTATKL LPSNQKSAIA SSMPAASTKA  1020
GGATEKRKVQ TRSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180RRRKKKK
2175180RRKKKK
3552557SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RGY41e-153A0A2R6RGY4_ACTCH; Pathogenesis-related homeodomain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-81Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain