PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0062s0156.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 193aa MW: 21147.9 Da PI: 5.3055 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91 | 1.4e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC+l++ + p++q ++ +v+++FG++ + ++++a+p ++r+ +++sl++eA r+ +Pv+G++g+++++++ Kaladp0062s0156.1.p 2 SCNGCRVLRKGCKEDCILRQSLewiqnPQAQGYATLFVARFFGRAGLFSFISAVPAHQRPGLFQSLLFEAAGRTVNPVSGSAGLLWTGNW 91 6*************************99************************************************************** PP DUF260 86 qleqlkaelallk 98 q +q+++e++l++ Kaladp0062s0156.1.p 92 QACQAAVEAVLRG 104 *******998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.616 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-23 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSCNGCRVLR KGCKEDCILR QSLEWIQNPQ AQGYATLFVA RFFGRAGLFS FISAVPAHQR 60 PGLFQSLLFE AAGRTVNPVS GSAGLLWTGN WQACQAAVEA VLRGGSLSPE MLAVVPEIDF 120 FKEPGTVEVK TSATPDATQI ETGTMTFHEE RQHEARVDDL VEESETTTFE SSSTYNGCYR 180 SRKDLKLLSL FV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313905.1 | 5e-64 | LOB domain-containing protein 39 isoform X1 | ||||
Swissprot | Q9SN23 | 3e-58 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9HMY4 | 1e-62 | B9HMY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09270.1 | 2e-63 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-60 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0062s0156.1.p |