PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0146.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 327aa    MW: 35870.1 Da    PI: 9.8408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-111565146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  Kaladp0062s0146.1.p 15 KQKWTAEEESALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 65
                         79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.08E-151280IPR009057Homeodomain-like
SMARTSM007171.5E-61469IPR001005SANT/Myb domain
PfamPF002496.9E-81565IPR001005SANT/Myb domain
PROSITE profilePS500907.5151567IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-131566IPR009057Homeodomain-like
CDDcd116609.65E-191666No hitNo description
SuperFamilySSF467855.44E-18130211IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.5E-14130195IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.9E-16131211IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.91132200IPR005818Linker histone H1/H5, domain H15
PfamPF005381.8E-9137193IPR005818Linker histone H1/H5, domain H15
CDDcd000739.47E-11138211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMTPINDFVL MGAPKQKWTA EEESALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK  60
DKWRNMSVMA NGWGSREKAR LALKRMQGQS TPKPDENQML LTYGPHSEDE SVDLKPLPSP  120
GVAHQASGSK RTITRLDNLI MEAINELKEP GGSNKTSIGN YIEEQYWAPP NFKRLLSAKL  180
KFFVSSGKLV KVKRKYRMPT SQVSPEKKKS PHPSLNLLEG RSRLPSRIDY DNFNLNDIKT  240
TSRAEIDLEL AKMRNMTAEE AAVAAARAVA EAEAAIAEAE EAAREAEAAE ADAEAAMAFA  300
EAARKTLKGR SGIKTVCSTV PIAACP*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892745.11e-109telomere repeat-binding factor 1
RefseqXP_015892746.11e-109telomere repeat-binding factor 1
RefseqXP_015892747.11e-109telomere repeat-binding factor 1
RefseqXP_024933194.11e-109telomere repeat-binding factor 1
SwissprotQ8VWK47e-91TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2R6RGW71e-109A0A2R6RGW7_ACTCH; Telomere repeat-binding factor like
STRINGVIT_03s0091g01030.t011e-104(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-91telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]