PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0062s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 435aa MW: 48981.6 Da PI: 4.62 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107 | 2.2e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+P+d+e+++ +L kv++++ ++ e+i++vd i++++P++Lp vk++ + ++fF+++ k+y++g+rk+r+ Kaladp0062s0046.1.p 58 LPRGVKFDPSDQEIIW-HLLTKVDSTNltphpfID--EFIATVDkddgICYTHPQNLP-GVKQDGSVTHFFHRAIKAYNSGTRKRRKihg 143 799************5.566677777656754433..33555544456**********.677888999******************8455 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tg++k+v+ +g + g+kk++v+y ++ k+ekt+Wvmh+y+l Kaladp0062s0046.1.p 144 ddASDVRWHKTGRTKPVML-DGVQRGCKKIMVLYmtAAKGGKAEKTNWVMHQYHL 197 5545899************.99************4434666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-39 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.371 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MARPAWLVDS TRIATKIKSA STACPPESIN WKSNPSRICP NCQHCIDNSD VPQEWPGLPR 60 GVKFDPSDQE IIWHLLTKVD STNLTPHPFI DEFIATVDKD DGICYTHPQN LPGVKQDGSV 120 THFFHRAIKA YNSGTRKRRK IHGDDASDVR WHKTGRTKPV MLDGVQRGCK KIMVLYMTAA 180 KGGKAEKTNW VMHQYHLGTE EDEKDGEYVI SKVFYQQNQA KLGENFEAEL MEISDLAAQK 240 VDPLTPKSVS PEPRRDERPY AELGNIDEAT DVNVESFAQD QLEADYVTNA DLEETMDLRN 300 QQLLNEENAL DDLMDYNDIN AGEGQKWWDS ESQNLLDSQQ LVEGLSLCDD LLRSQSPSRD 360 FAVPEPHKPK AKPCLSDYAT LGPNDLKRDL EECQKLVLDP ANIEIDTPPD YRLSQLEFGS 420 QDSFLAWGGH KLGD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028087921.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-174 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2R6QQM2 | 0.0 | A0A2R6QQM2_ACTCH; NAC domain-containing protein (Fragment) | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-176 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0062s0046.1.p |