PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0061s0175.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 426aa MW: 46608 Da PI: 7.7434

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0061s0175.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	103	163	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ss Kaladp0061s0175.1.p 103 PDKILPCPRCNSMETKFCYYNNYNVKQPRHFCKNCQRYWTAGGSMRNVPVGSGRRKSKSSS 163 68999****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	100	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	105	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MSPFPNPTIK LFGKTIPLSP PNLEALHPAS DWSDGGELAG DDSSKEMEEV GDFDAKKHIV 60 QVEDEDHHGS ASPGIIDLEG SAEGLENRDQ SQEAPNGKTL KRPDKILPCP RCNSMETKFC 120 YYNNYNVKQP RHFCKNCQRY WTAGGSMRNV PVGSGRRKSK SSSGSFCRQI LVNETELNGM 180 LRPESDAPLC DSMANVLNMA ERRENCCEYR IRDKRIHMVR SCDSGLSEPN SGGSNLTEKG 240 NLVQDGMTNF PGYPFQVPCY PGPPWPITWS PATSTPHLGL AVSPGQYWAS AMMASWIHHS 300 SISSPSTASQ HSSLSSSPNS PTLGKHSRGG EMINDRNESD DKAAQSKPKA SRGIWIPKTL 360 RIDDPNQAAK SSIKEGGIFK SFPLKNGSIG NHKVPDRSLR LHTNPAALSR SQNFHETTSM 420 EHTSS*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MSPFPNPTIK LFGKTIPLSP PNLEALHPAS DWSDGGELAG DDSSKEMEEV GDFDAKKHIV  60
QVEDEDHHGS ASPGIIDLEG SAEGLENRDQ SQEAPNGKTL KRPDKILPCP RCNSMETKFC  120
YYNNYNVKQP RHFCKNCQRY WTAGGSMRNV PVGSGRRKSK SSSGSFCRQI LVNETELNGM  180
LRPESDAPLC DSMANVLNMA ERRENCCEYR IRDKRIHMVR SCDSGLSEPN SGGSNLTEKG  240
NLVQDGMTNF PGYPFQVPCY PGPPWPITWS PATSTPHLGL AVSPGQYWAS AMMASWIHHS  300
SISSPSTASQ HSSLSSSPNS PTLGKHSRGG EMINDRNESD DKAAQSKPKA SRGIWIPKTL  360
RIDDPNQAAK SSIKEGGIFK SFPLKNGSIG NHKVPDRSLR LHTNPAALSR SQNFHETTSM  420
EHTSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-61	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Kaladp0061s0175.1.p