PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0061s0032.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 701aa    MW: 78552 Da    PI: 5.4401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0061s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-1365105748
                          HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           Ede+++++v + G   W+ Ia++++ gR +kqc++rw+ +l
  Kaladp0061s0032.1.p  65 KEDEKIIELVGKNGATKWTNIAKHLP-GRIGKQCRERWYHHL 105
                          6*************************.************886 PP
2Myb_DNA-binding47.34.8e-15111153145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  Kaladp0061s0032.1.p 111 KENWTQEEELTLIHAHRIYGNK-WAELTKFLP-GRSDNAIKNHWN 153
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.001134565No hitNo description
SuperFamilySSF466891.5E-1347104IPR009057Homeodomain-like
PROSITE profilePS5129412.88554105IPR017930Myb domain
SMARTSM007171.7E-859107IPR001005SANT/Myb domain
CDDcd001679.17E-1262105No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2265113IPR009057Homeodomain-like
PfamPF139218.5E-1465120No hitNo description
SuperFamilySSF466898.05E-2685160IPR009057Homeodomain-like
PROSITE profilePS5129423.629106160IPR017930Myb domain
SMARTSM007172.5E-14110158IPR001005SANT/Myb domain
CDDcd001672.75E-11113153No hitNo description
Gene3DG3DSA:1.10.10.603.1E-19114159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MGLPKSDLRI GLVDLLGVRP RGSGQLKRMK LCGRQLNIIM ARVGKKIAEC LGGRTDVQCL  60
HRWQKEDEKI IELVGKNGAT KWTNIAKHLP GRIGKQCRER WYHHLDPAIK KENWTQEEEL  120
TLIHAHRIYG NKWAELTKFL PGRSDNAIKN HWNSSVKKKE ESFMAAGLLS NFPGVPDFGQ  180
QKLSVAFSST QQTSGENSHM RGGSEEDGVL ECSQASTTLG CSQTSNDLTI KVESLNPIQE  240
CHKNSLVDGN HSLSCNVGLD EIGDPMLSQS SHIQISQANE TSDLPSNDPA SDYLDIPSFE  300
HLFYDEPNQC QNSFPETQGQ DFYQSTHDDF SYINQYDMNP TEIASENKVV YEESESGSHR  360
IHAMAKSPDK SQCCTPMEVQ PALVHGEKIN NGGAAYYEPP HLTNLDIPFV SCDLVKSGDF  420
LEEEYSPLGI RQLLLMNSFS PLRLWDDSPE AGLKSGTKTF TRTPSILKKR HRDLLSPLSE  480
KRVDKKQDSE PEQNSFSGLA QDTSQFNDNR KENFDPVLKT VEKDQTEGLS YERVLEDINR  540
DPKAHLDAND AVHQSSEDLA DKEIEKLILF SPRVQIQAEK ELYAKGYLNL TSLPGNSNES  600
DRYTANEIIS FHTHSLTPRL RGIMVKKPFI DADSDKSSRS EGTPFKIFFE SPTLDSPLFA  660
KLFLPGPRID TDISIEDIGY LITPDSKSYD AIGIMKKLSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-434515930158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-434515930158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7G74e-63MB3R1_ARATH; Transcription factor MYB3R-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-65Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]