PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0061s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25391.3 Da PI: 11.4638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.3e-16 | 30 | 79 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++++ +r ++ +gr++AeIrd ++ ++r++lg+f++ e A +a++aa+++l+ Kaladp0061s0002.1.p 30 PKFRSIRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSVEAATRAYDAAARSLR 79 79********.**********883....5**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-10 | 30 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-16 | 30 | 88 | No hit | No description |
PROSITE profile | PS51032 | 20.455 | 31 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 31 | 89 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-27 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-29 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGKVRGGATA AASLGNQVKD APLEIGFAEP KFRSIRKRPW GRFAAEIRDP WKKTRVWLGT 60 FDSVEAATRA YDAAARSLRC PKARTNFPTP PSSSIVFIFH RVAFEPSSSI VFMFGVVFES 120 SSSSSEPSSN ISKFNSSSSN LRAELELKKK LSSQVRALRI KARRVRAEFE PMTKPKTKKM 180 IPSLNRERQF LMDSGLYMRI QRLAQTMGWS RMADLSCHTD HIATIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 25 | 88 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-23 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0061s0002.1.p |