PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0060s0471.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 42488.9 Da PI: 7.0173 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l +++++G g+W++ ar+ g++Rt+k+c++rw++yl Kaladp0060s0471.1.p 66 RGPWTVEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 113 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 119 | 162 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Kaladp0060s0471.1.p 119 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 162 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.388 | 61 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-31 | 63 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-14 | 65 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-17 | 66 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 67 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-11 | 68 | 113 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 118 | 166 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.707 | 118 | 168 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.9E-15 | 119 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 121 | 167 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-7 | 139 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEGYMNGRSV AAEKQQQYYS NMSSLVGGGG VAMSSNSNNQ NHHKVQSSSS GEEEEDEMGM 60 MMDLRRGPWT VEEDHTLMSY IAKHGEGRWN SLARCAGLKR TGKSCRLRWL NYLRPDVRRG 120 NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LKCDVNSKQF 180 KDTMRYLWMP RLVERIQAAA AANGASSPRN PLNHTLPNLT APIHHHHHHN LIIPPTTAPS 240 HHFTSSSYVC SDNSSTTAAS SDSFGAQVSP ASDMAEDYQM PGSCYNLNNN VDYFTGSNNG 300 GQICYSDSLI SPAGYYHPQA ADFPSMEQHS SNNQNSSGLI SNNLNQWLVE GGDLSDNMWN 360 VEDIWLLQQQ QLNNNNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 63 | 166 | 4 | 106 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115735.1 | 1e-126 | transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 4e-88 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | B9HX62 | 1e-124 | B9HX62_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s15970.1 | 1e-125 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-81 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0060s0471.1.p |
Publications ? help Back to Top | |||
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