PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0452.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 330aa MW: 36438.4 Da PI: 5.4781

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0452.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFveav+qLGG+++AtPk +l++m+v gLt++hvkSHLQkYRl Kaladp0060s0452.2.p 46 KQRLRWTNDLHDRFVEAVAQLGGPDRATPKGVLRVMGVSGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.908	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-32	45	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.43E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MRATPLDLAS EKSSAQGKPS HGRESNMEPG GGDSNNQSSN PNLASKQRLR WTNDLHDRFV 60 EAVAQLGGPD RATPKGVLRV MGVSGLTIYH VKSHLQKYRL AKYLPDSSSD GKVENKESGD 120 TGSSQDGSAG MQITEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLKK IIEEQQRLGV 180 FTLEEDPAPA TDIPQSNNSK IDSAGPGPAS RFSLEDKSNN LFTDKRHFVD EAFPYLQEPL 240 TPDSACDRNS PTESLKDDQP FKKQRLSVNM NEPFDRPENE VSPQMVEGST PLHQQPSSGP 300 FTQLQFDLTP GISVRDEDRA EKLPGGSYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373551.1	1e-111	myb family transcription factor PHL7 isoform X1
Refseq	XP_024443124.1	1e-111	myb family transcription factor PHL7 isoform X3
Swissprot	Q9SJW0	1e-94	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2I4KK58	1e-109	A0A2I4KK58_POPTR; G2-like family protein
TrEMBL	B9N3W8	1e-109	B9N3W8_POPTR; Uncharacterized protein
STRING	POPTR_0016s00310.1	1e-110	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-81	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0060s0452.2.p