PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0451.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 304aa MW: 33223.9 Da PI: 7.0233

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0451.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.3e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Kaladp0060s0451.2.p 45 KPRLRWTADLHERFVDAVGQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.099	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-31	42	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	45	100	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-16	45	101	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-15	140	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MFPLLMQPHD GGLTPLGHGR DDIHGIGVCS YGVGDPCLVL TSDPKPRLRW TADLHERFVD 60 AVGQLGGPNK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG KQSGKDMCDI VKDGSYLIEV 120 PESNNSAPKL LTPDTNEGFE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AERRYMAMLD 180 RACRMLADHY VGGAVIDADK DKSQCMDAKK LPSMTFTHDT VPSYTLQPST TAGLHGLEEL 240 LPGLHTQRAD CSTESCLTSH DSSAGSRKRM LHADSVAQYL LWGEANMAMP NVSVSQGIAG 300 YST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224659.1	1e-127	PREDICTED: myb family transcription factor APL-like isoform X1
TrEMBL	M5WGF6	1e-125	M5WGF6_PRUPE; Myb family transcription factor APL
STRING	XP_008224659.1	1e-127	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0060s0451.2.p