PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0060s0175.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 22264.3 Da PI: 7.842 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.4e-16 | 83 | 129 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR++iN+++ L++l+P++ K +Ka++L A+eY+k+Lq Kaladp0060s0175.1.p 83 VHNMSEKRRRSKINEKMKALQDLIPNS-----NKTDKASMLDDAIEYLKQLQ 129 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-19 | 76 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-20 | 76 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.962 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-16 | 82 | 133 | No hit | No description |
Pfam | PF00010 | 1.2E-13 | 83 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-18 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MFDHAAAPSP AFSDSDEISA LLRQILHRSS NQCNRQFQTP TELPIDDLVE HDGPSEVGEG 60 LEALVEEATK RRRSSKRRRA AEVHNMSEKR RRSKINEKMK ALQDLIPNSN KTDKASMLDD 120 AIEYLKQLQL RVQMLTLRNG LILHPMSLPR RPATQPMLGV MSGASPEALK LESSSPGDDL 180 LKSHPASEVV FNYGLVHPH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 91 | RRRAAEVHNMSEKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}. | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035360 | 2e-40 | BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds. | |||
GenBank | KJ726860 | 2e-40 | KJ726860.1 Zea mays clone pUT3401 bHLH transcription factor (bHLH125) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022884303.1 | 1e-45 | transcription factor SPATULA-like isoform X1 | ||||
Refseq | XP_022884305.1 | 2e-46 | transcription factor SPATULA-like isoform X2 | ||||
Swissprot | Q9FHA2 | 4e-37 | ALC_ARATH; Transcription factor ALC | ||||
Swissprot | Q9FUA4 | 2e-36 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A061DH16 | 4e-44 | A0A061DH16_THECC; Homeodomain-like superfamily protein isoform 2 | ||||
TrEMBL | A0A061DNA7 | 5e-44 | A0A061DNA7_THECC; Homeodomain-like superfamily protein, putative isoform 3 | ||||
STRING | EOX91461 | 7e-44 | (Theobroma cacao) | ||||
STRING | EMJ05761 | 2e-44 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0060s0175.1.p |