PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0060s0146.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 326aa MW: 36438 Da PI: 7.2654 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.3e-32 | 196 | 251 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGse+AtP++i+++m v+gLt+++vkSHLQkYRl+ Kaladp0060s0146.1.p 196 KQRRCWSPELHRRFVDALQQLGGSEVATPRQIRDIMRVEGLTNDEVKSHLQKYRLH 251 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.73E-17 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-28 | 195 | 254 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.516 | 195 | 253 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.0E-26 | 196 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 198 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MDPIPTRDFL KFDDPPRRKL QRLADQVAGL EAERRKIEAF KRELPLCLDL LNDAVERFRE 60 ELRKCGDGGA ADCNCDKVEG PNSENDNDMK SWMSSVKLWN HHANDSPDFN STSSNVKSMI 120 EAEAVAENAG GAKMEIKGNS GDEVSLMKPV HAVARTVELE QLCGESARNL NRGKTLVHEL 180 KMQKKIQQAQ EQVGRKQRRC WSPELHRRFV DALQQLGGSE VATPRQIRDI MRVEGLTNDE 240 VKSHLQKYRL HMRKAPAPTA SQDDPRQPLH SKSHSIISPQ GPLDAKRSAA SGNYSASVLD 300 AEEAEEENEG HSWRGGVLFR PACRC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-15 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-15 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-15 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-15 | 196 | 249 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-48 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0060s0146.1.p |