PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0135.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 301aa MW: 33650.1 Da PI: 9.1867

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0135.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51	2.6e-16	34	119	10	100
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + +++p f++++ g + ++tl + gr+W++ + ++ +++ ++ GWkeF++an L+ D++ F+++g s+f v+vf+ Kaladp0060s0135.1.p 34 DFS-DKMRVPPAFVRRFpG-G--FPEKITLDSCAGREWRIDVAKSRDDNSLCFRCGWKEFAEANSLQFADVLFFSYVGGSTF--DVRVFD 117 444.4599*******54.4..4457***********99999999*************************98888..999999 PP SS CS B3 99 ks 100 ks Kaladp0060s0135.1.p 118 KS 119 85 PP
2	B3	43.5	5.6e-14	202	299	7	97
.-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE........EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 7 psdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy......rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 ++++ ++g l +p +f++++ g +s++++l +sgr+W +++ +++ r +l++G k Fv +n+L+eg ++ F+l+ Kaladp0060s0135.1.p 202 SKSSCQRGYLNVPMSFVQRCpelG---SGSRQVKLSVpSSGRTWLTNYTTrlekcrGRRQ-RrNLLSGGFKAFVVDNNLREGNVCAFELV 287 4555667789********7532...46677888886789***878877743333.36************************* PP SSSEE..EEEEE CS B3 86 grsefelvvkvf 97 +++++ ++v++f Kaladp0060s0135.1.p 288 DEQGAVFNVHIF 299 999998999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-22	22	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.4E-21	23	121	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.719	24	119	IPR003340	B3 DNA binding domain
CDD	cd10017	3.33E-20	26	117	No hit	No description
SMART	SM01019	1.7E-11	27	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-14	29	118	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.46E-15	193	300	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-17	193	300	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.66E-14	195	300	No hit	No description
PROSITE profile	PS50863	11.998	196	300	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-5	197	300	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-11	201	299	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTFLRADSEV NGHHHQPGLK TPELTSFYKI MISDFSDKMR VPPAFVRRFP GGFPEKITLD 60 SCAGREWRID VAKSRDDNSL CFRCGWKEFA EANSLQFADV LFFSYVGGST FDVRVFDKSG 120 CQKRINPALQ NPSDPPPVKL EPDSGCSSHQ PDFSCAPSRA CDTDVKELRA SAPGPKPTPS 180 KAFEQATDYS NTYTKSFRVR LSKSSCQRGY LNVPMSFVQR CPELGSGSRQ VKLSVPSSGR 240 TWLTNYTTRL EKCRGRRQRR NLLSGGFKAF VVDNNLREGN VCAFELVDEQ GAVFNVHIFK 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-15	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0060s0135.1.p