PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0074.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 1088aa MW: 122276 Da PI: 8.4647

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.7	8e-13	10	59	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle Le++++k+ryp+++e++ A++l+Lt +qV+ WF rR kek+ Kaladp0060s0074.1.p 10 TPLQLELLEQFYAKERYPTQSEMKNYAASLRLTLKQVRGWFVERRRKEKR 59 889**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.2E-13	2	64	IPR001356	Homeobox domain
CDD	cd00086	1.68E-6	5	54	No hit	No description
SuperFamily	SSF46689	5.13E-12	7	60	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-13	8	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.009	10	60	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-10	10	59	IPR001356	Homeobox domain
SMART	SM00571	6.7E-9	340	399	IPR018501	DDT domain
PROSITE profile	PS50827	12.466	340	399	IPR018501	DDT domain
Pfam	PF02791	2.2E-9	342	396	IPR018501	DDT domain
Pfam	PF15612	9.7E-5	619	651	IPR028942	WHIM1 domain
Pfam	PF15613	3.0E-10	745	818	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1088 aa Download sequence Send to blast
MEAGKPCVKT PLQLELLEQF YAKERYPTQS EMKNYAASLR LTLKQVRGWF VERRRKEKRE 60 KGGSELTSAY YAEKFRSICR SRETGKLSYP AIATINKPFR VQDRLWTPDY IISKILRKDG 120 PALGADFDSI PDRSSSESPA SRFAGQEAQG SPKRRKVCKR QDCNGKEVPG KKHGVGKGLI 180 TAWRVANPGA GCYPTGIGCD LVPSIASSQK LSVKRKQLKR PRPLRKDNCL GNKKQEKKAR 240 VPLQRRKQVV HKLTGRKECG LAVEEIASRE QHDLFGDLID DEELELKELQ AGPNPVTCSA 300 HFATSTLHRC SFCKDLLSKF PPVSLKMKQP FCIQPWHSSP EMVKQLFKVV HFLYTYAAVF 360 DIRPFTVDDF AQAFHDKDSL LLVEVHLSLL KFLLSDIKRE LSNGFPLQYS TSCKFLRLLQ 420 AVRHQDSVVD AWSRFLNPLT WTEILRQIFV AAGYGSKHSI SSKELQSKRE VNPMVKYGLA 480 PGTLKGELFG ILSHQGNKGL KVSELARSTQ IGALELNCTM DALELLISSA LSSDITLFEK 540 ISPSAYRLRI SFTEENFQPD IEYSGTINDC SMNTVMDSSS DSEHDSGNSS LSQVDRQSWR 600 RKQKASRLSV DNEIDESHPG EVWLLGLAES EYSNLRIEEK LNALVALVDL LRSISCFRYE 660 KEKECGRDTF PRRLHYGSGA KIKRSTVKQN LTRPSWASLD QMHTRGDHPV DSSTSASKFL 720 LNEGSSSKKN GPVEAGDGFN SHPMQSVFLG SDRRYNQYWL FLGPCSDSDP GHRRIYFESS 780 EDGHWEVIDS EEAFGVLRSV LDNRGTREAF LCASLQKRER CLLQGMSSGN GISSGCRDGE 840 ACDQNLISQD SCSPVSDVDN TLSCCDSRNT PLALSGAINL QKGDYQKQNW YKLQAFDKWT 900 WNSFYTTLNA VKYYRRSYLG SLARCEACHD LYWRDEKHCK VCHTTFELHF DLEEKYAIHV 960 ATCKAMGEND CSPTHKVLSS QLQSLKAAVY AVESAMPEDS LTGSWRQSAH NLWSKRLRRT 1020 SSLAELLQVL TDFVGAINED WVSACSAAAD SSSICEEVIK SFPPFPQTSA AVALWLVKLD 1080 ALIAPFL*

Sequence ? help Back to Top

Protein Sequence Length: 1088 aa Download sequence Send to blast

MEAGKPCVKT PLQLELLEQF YAKERYPTQS EMKNYAASLR LTLKQVRGWF VERRRKEKRE  60
KGGSELTSAY YAEKFRSICR SRETGKLSYP AIATINKPFR VQDRLWTPDY IISKILRKDG  120
PALGADFDSI PDRSSSESPA SRFAGQEAQG SPKRRKVCKR QDCNGKEVPG KKHGVGKGLI  180
TAWRVANPGA GCYPTGIGCD LVPSIASSQK LSVKRKQLKR PRPLRKDNCL GNKKQEKKAR  240
VPLQRRKQVV HKLTGRKECG LAVEEIASRE QHDLFGDLID DEELELKELQ AGPNPVTCSA  300
HFATSTLHRC SFCKDLLSKF PPVSLKMKQP FCIQPWHSSP EMVKQLFKVV HFLYTYAAVF  360
DIRPFTVDDF AQAFHDKDSL LLVEVHLSLL KFLLSDIKRE LSNGFPLQYS TSCKFLRLLQ  420
AVRHQDSVVD AWSRFLNPLT WTEILRQIFV AAGYGSKHSI SSKELQSKRE VNPMVKYGLA  480
PGTLKGELFG ILSHQGNKGL KVSELARSTQ IGALELNCTM DALELLISSA LSSDITLFEK  540
ISPSAYRLRI SFTEENFQPD IEYSGTINDC SMNTVMDSSS DSEHDSGNSS LSQVDRQSWR  600
RKQKASRLSV DNEIDESHPG EVWLLGLAES EYSNLRIEEK LNALVALVDL LRSISCFRYE  660
KEKECGRDTF PRRLHYGSGA KIKRSTVKQN LTRPSWASLD QMHTRGDHPV DSSTSASKFL  720
LNEGSSSKKN GPVEAGDGFN SHPMQSVFLG SDRRYNQYWL FLGPCSDSDP GHRRIYFESS  780
EDGHWEVIDS EEAFGVLRSV LDNRGTREAF LCASLQKRER CLLQGMSSGN GISSGCRDGE  840
ACDQNLISQD SCSPVSDVDN TLSCCDSRNT PLALSGAINL QKGDYQKQNW YKLQAFDKWT  900
WNSFYTTLNA VKYYRRSYLG SLARCEACHD LYWRDEKHCK VCHTTFELHF DLEEKYAIHV  960
ATCKAMGEND CSPTHKVLSS QLQSLKAAVY AVESAMPEDS LTGSWRQSAH NLWSKRLRRT  1020
SSLAELLQVL TDFVGAINED WVSACSAAAD SSSICEEVIK SFPPFPQTSA AVALWLVKLD  1080
ALIAPFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RRRKEK
2	52	59	RRRKEKRE
3	218	222	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645137.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	F6H9W6	0.0	F6H9W6_VITVI; Uncharacterized protein
STRING	VIT_19s0085g00350.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kaladp0060s0074.1.p