PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0059s0319.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 317aa MW: 34273.5 Da PI: 8.331

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0059s0319.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.4e-33	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Kaladp0059s0319.1.p 49 KPRLRWTADLHERFVDAVTQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.203	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-31	46	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.68E-16	49	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-24	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-8	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-16	147	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MQSGSCGILE KMFPLLMQPR DGGLVPLGHG RDDIHGVGDP CLVLTSDPKP RLRWTADLHE 60 RFVDAVTQLG GPNKATPKAI MRTMGVKGLT LFHLKSHLQK YRLGKQSGKD MCDIVKDGLP 120 GSYLIEDPEI NNCAPKLPTP DTNEGFEVKE ALRAQMEVQS KLHLQVEAKK HLQIRQDAER 180 RYMAMLDSAC KMLAGHHLGD ADKDKSRCMG ANKPPPTTFL TPNAVPPYTL KPSTVPGLHG 240 LEELVPGLHT QRADCSTESC LTSLGSPAGY TLQVPPAGSK KRVLNADSVA QCLSWGEANM 300 RLPNVGVSQG IVGYST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019074068.1	1e-126	PREDICTED: protein PHR1-LIKE 2
TrEMBL	M5WGF6	1e-123	M5WGF6_PRUPE; Myb family transcription factor APL
STRING	XP_008224659.1	1e-125	(Prunus mume)
STRING	XP_008351120.1	1e-125	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0059s0319.1.p