PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0059s0312.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YB | ||||||||
Protein Properties | Length: 236aa MW: 25333.5 Da PI: 6.4193 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 175 | 7.5e-55 | 58 | 154 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrf+Pianv+rim+k+lP++akis+daket+qecvse+isf+tsea+++cq+e+rkti+++d+lwa+++lGf+dy+epl++yl++y Kaladp0059s0312.1.p 58 VREQDRFMPIANVIRIMRKILPSHAKISDDAKETIQECVSEYISFITSEANERCQQEQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRY 147 69**************************************************************************************** PP NF-YB 91 relegek 97 r++eg++ Kaladp0059s0312.1.p 148 RDMEGDR 154 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-51 | 53 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-38 | 61 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.6E-27 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-17 | 92 | 110 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 95 | 111 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-17 | 111 | 129 | No hit | No description |
PRINTS | PR00615 | 1.6E-17 | 130 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDGGSGGGGF HGFHRFPVHS SPGMKLTTDM NVKLPEIARE GGSSNGTSAA AEDGECTVRE 60 QDRFMPIANV IRIMRKILPS HAKISDDAKE TIQECVSEYI SFITSEANER CQQEQRKTIT 120 AEDVLWAMSK LGFDDYIEPL TLYLHRYRDM EGDRGAIRGD PLLVKRAPPP EYGMVAAGYG 180 AFPAAGFHMG HHHGFFGPPG MGMYYKDMLA NGNGGGPPPA GGGGAAAEPR QSQSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-61 | 57 | 149 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF605519 | 0.0 | EF605519.1 Kalanchoe tomentosa leafy cotyledon 1-like (LEC1) gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023738233.1 | 2e-94 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | Q84W66 | 5e-73 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2J6K5F6 | 4e-93 | A0A2J6K5F6_LACSA; Uncharacterized protein | ||||
STRING | cassava4.1_032889m | 1e-86 | (Manihot esculenta) | ||||
STRING | XP_004295333.1 | 1e-86 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 4e-69 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0059s0312.1.p |