PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0059s0310.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YB | ||||||||
Protein Properties | Length: 174aa MW: 18869 Da PI: 5.3791 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 182.7 | 3.1e-57 | 18 | 113 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 reqdr+lPianvsrimkk+lPanakisk+aketvqecvsefisf+t+eas+kcqrekrktingddllwa++tlGfedyveplk+yl+k+r Kaladp0059s0310.1.p 18 REQDRLLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASEKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKFR 107 89**************************************************************************************** PP NF-YB 92 elegek 97 e+egek Kaladp0059s0310.1.p 108 EMEGEK 113 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-55 | 12 | 118 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-41 | 20 | 117 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.2E-28 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.0E-21 | 51 | 69 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 54 | 70 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.0E-21 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 4.0E-21 | 89 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAESDNESGG QSSNMATREQ DRLLPIANVS RIMKKALPAN AKISKEAKET VQECVSEFIS 60 FITGEASEKC QREKRKTING DDLLWAMTTL GFEDYVEPLK IYLSKFREME GEKMNLGRVP 120 QQGDSGEYGG GGYGGGGGGM GYGMMQQQQQ QMYDGGGYDH GAGRRVSTGR SGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-49 | 18 | 108 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-49 | 18 | 108 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021992935.1 | 9e-72 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_022734186.1 | 9e-72 | nuclear transcription factor Y subunit B-3-like | ||||
Refseq | XP_023752129.1 | 2e-71 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 5e-69 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A1B0T6Z9 | 1e-71 | A0A1B0T6Z9_CHRMO; NF-Y protein (Fragment) | ||||
STRING | XP_010252766.1 | 8e-70 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-71 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0059s0310.1.p |
Publications ? help Back to Top | |||
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