PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0110.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 557aa    MW: 60585 Da    PI: 7.3423
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix544.4e-17176262186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea+ ++  +l++g+l++ +Weev+  +re+     +s +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  Kaladp0059s0110.2.p 176 EWSDTAIGCLLEAYMSKYAQLNKGNLRGRDWEEVAGMVREGCQkqAKSVEQCKNKVDNLKKRYKLERHRMSSG-GVSTSHWPWFQKME 262
                          5**********************************998765442256999**********************9.667779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-19174264No hitNo description
SMARTSM005950.0051184269IPR006578MADF domain
Gene3DG3DSA:3.40.1160.103.6E-64299549IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.361314550IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-49315549IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.79E-94317550No hitNo description
PfamPF006963.6E-20318529IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLNQTPSSFL FLHLTPSSSP NETLTVTSPT PLSMASCDDD FPLLPDDRHH HHHQQQQSHP  60
QFQHQGFYRL NRFINKVATA PTARSPIRGG RDEGSERFAD LSFTAKCASA FPDVAPFSGD  120
EEAGEEEEAA NQSSGRKERE EVIDGTALYK RSKIGEGSGS GSAAPGGGDY RRDREEWSDT  180
AIGCLLEAYM SKYAQLNKGN LRGRDWEEVA GMVREGCQKQ AKSVEQCKNK VDNLKKRYKL  240
ERHRMSSGGV STSHWPWFQK MEEIFGDLVP RNTADLEEDK AVQSSSRQAK RYSVATANPV  300
SPLLNVRMKQ APRLRWRRVV FKISGVALAG TGSGSNNFDP EVARLIASEV AKASRAGVEV  360
AIVVGGRNLF CGDTWVTATG SDRSTAYQIG MMATVMNSIL LQSAMEKMGI QARVQSGLIV  420
QESAEPYNRQ RAIRHLEKGR IVIFGGVGVG IGNPLFSTDT AAALRASEIH AEAVLKGANA  480
DGLYGCNSGN NNIFEHISFR ALGSGGANFM DMMALSYCEE NSIPVVVFNL LEPGNISKAI  540
CGEQVGTLID QTGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-523145497239Uridylate kinase
3ek5_B7e-523145497239Uridylate kinase
3ek5_C7e-523145497239Uridylate kinase
3ek5_D7e-523145497239Uridylate kinase
3ek5_E7e-523145497239Uridylate kinase
3ek5_F7e-523145497239Uridylate kinase
3ek6_A7e-523145497239Uridylate kinase
3ek6_B7e-523145497239Uridylate kinase
3ek6_C7e-523145497239Uridylate kinase
3ek6_D7e-523145497239Uridylate kinase
3ek6_E7e-523145497239Uridylate kinase
3ek6_F7e-523145497239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277826.10.0PREDICTED: uncharacterized protein LOC100264768 isoform X2
TrEMBLF6HKF70.0F6HKF7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-172Trihelix family protein