PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0081.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 439aa    MW: 48295.4 Da    PI: 9.3213
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092953321954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Kaladp0059s0081.1.p 295 FEHflHPYPSDTDKNLLAQRTGLSRNQVSNWFINARVR 332
                          554459******************************88 PP
2BELL73.14.7e-24168231770
                 BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                          +k + L+ ll+eV kr kqy++ lq v++sFe+v glg+a+pYts+Al +++++FrcLk  i e
  Kaladp0059s0081.1.p 168 NKDSGLILLLDEVFKRCKQYCQHLQSVVASFETVPGLGNAAPYTSFALGTMAQQFRCLKKTIFE 231
                          68889*******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.6E-27113231IPR006563POX domain
PfamPF075261.1E-26118229IPR006563POX domain
SMARTSM003891.4E-7276340IPR001356Homeobox domain
CDDcd000861.02E-10276336No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25279340IPR009057Homeodomain-like
SuperFamilySSF466892.31E-15280340IPR009057Homeodomain-like
PfamPF059202.6E-18293332IPR008422Homeobox KN domain
PROSITE profilePS5007111.774295336IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MESSTSSVPP PPKRHKLPLH PPPAAITISP PPHDRHPTDS LRNLSSTRQP TPLGSTPFST  60
SSLCSGPARP RDLARGGLSL SLSSDRPRCI GRDSPVRARE AWRGSAVPLG PFTGYASILS  120
RSRFLKPAQD LLDELCGVDS RPVNRSSFHG FCDSAGIVSM DLDDVAGNKD SGLILLLDEV  180
FKRCKQYCQH LQSVVASFET VPGLGNAAPY TSFALGTMAQ QFRCLKKTIF ERARVVGEAI  240
GYEGVNSLTL GCREPHQSSE NWKPVQTSPS LQHPVWRSQR GLPAHAVTVF KNWLFEHFLH  300
PYPSDTDKNL LAQRTGLSRN QVSNWFINAR VRLWKPLVEE IHTLDEQRGQ PADPKSSKRR  360
TPTLSFDHPP RDFDLPMLPG QQRQERRNPS CSESYLDNLS TSASKHSRTE ENIGISLALG  420
LQQESGLGNP ASHGAFNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-14282340563Homeobox protein Meis2
4xrm_B3e-14282340563Homeobox protein Meis2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353359PKSSKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGAquca_003_00184.17e-83(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-66TALE family protein