PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0055.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 270aa    MW: 30813.7 Da    PI: 9.5661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.7e-102166346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +l+  a + + ++   +W+++a++++ g++ k+++s +  
  Kaladp0059s0055.1.p 21 YWTREENKLFESALAIYDKNtpdRWEKVAQMIP-GKSVKDVISQYKE 66
                         6********************************.*********9975 PP
2Myb_DNA-binding42.21.9e-13119164247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++WT++E+ +++ +  ++G+g+W++I+r +   +t+ q+ s+ qky
  Kaladp0059s0055.1.p 119 LPWTEDEHRRFLMGLLKHGKGDWRSISRNFVASKTPTQVASHAQKY 164
                          69*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-41567IPR009057Homeodomain-like
PROSITE profilePS5129310.5981770IPR017884SANT domain
SMARTSM007171.5E-101870IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-132076IPR009057Homeodomain-like
PfamPF002492.1E-82166IPR001005SANT/Myb domain
CDDcd001674.57E-92267No hitNo description
PROSITE profilePS5129416.276113169IPR017930Myb domain
SuperFamilySSF466893.74E-16115169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-16116167IPR006447Myb domain, plants
SMARTSM007171.5E-9117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9119163IPR009057Homeodomain-like
PfamPF002491.0E-10120164IPR001005SANT/Myb domain
CDDcd001672.67E-8120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYQTFQLQNS NWLPQKSHSS YWTREENKLF ESALAIYDKN TPDRWEKVAQ MIPGKSVKDV  60
ISQYKELEDD VINIEAGLVP TPGYLTSSFT LELGDDRDFD VLRKKSRARS ADREKKKGLP  120
WTEDEHRRFL MGLLKHGKGD WRSISRNFVA SKTPTQVASH AQKYFLRLNS GLKDKRRPSI  180
HDITTTNLSN APPSHDSGLA AFDQFVVLPP REKEQNVALD WNQHGNLSVM GFEPNLPPAP  240
YESLYGYGIH VGSHNPMFEV QSARQRIRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1622971186RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102116RKKSRARSADREKKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821689.11e-104PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2N9H1W51e-107A0A2N9H1W5_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-83MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]