PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0032.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 674aa    MW: 74175.7 Da    PI: 7.576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06268288526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Kaladp0059s0032.1.p 268 PCPEFRK-GSCRQGDACEYAHG 288
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.68E-1674161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00377107IPR002110Ankyrin repeat
PROSITE profilePS5029714.63777157IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-777144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1478157IPR020683Ankyrin repeat-containing domain
CDDcd002046.96E-1379175No hitNo description
PROSITE profilePS5008810.152112147IPR002110Ankyrin repeat
SMARTSM002480.016112144IPR002110Ankyrin repeat
PROSITE profilePS5010312.812263290IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4263289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4268289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4295327IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.047298322IPR000571Zinc finger, CCCH-type
SMARTSM0035656298321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCIYPKADNT FSSNLLREGR DHKQNMEALM KCSVLLELSA FDDLDSFVKQ VEEKGLSADE  60
AGFWYGRGVG SRKMGIEERT PLMIASMYGS LKIVQYIIGT GKVDVNRACG SDGVTALHCA  120
AAGGSYLALE VTKCLIGASA NINSVDAKGN KPVDLIAPGL KTARFSKRKL LEMLLKGISL  180
TGDEIDREVE QQVITPRLSS EKKEYPVDIS LPDINDGVYG TDEFRMYSFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYPYTCVPCP EFRKGSCRQG DACEYAHGVF ESWLHPAQYK  300
TRLCKDEVGC ARKVCFFAHK PEELRPVYAS TGSAMPSPKS LSSSMDMGAL SPLPHGSLSS  360
MMPQTSTPPM SPAAATPSPK SGNLWQNKLN LTPPMLQLPG SRLKTASSAR DLEFEMEMLG  420
LENQHRQQQQ YLMDEITRLS SPTSWNKQQS RFGDLNPTNL DDSFGSLDMS LLSQMQGISS  480
QIQSPTGLQM RQSLNQHGNY PNNYCSSPVR KQAPSFGFDS SAAVAAAVMK SRTSAFAKRS  540
QSFVDRSVGN NRGGLNGSGH SMNMTASNIS DWNSPSGRLD WGMQGEDLNK LRKSASFGIR  600
SSNNNNNMAQ TTLAPSTFDE PDVSWVNSLV KDAPTLGSEY CNSPGKQSQY LRSDETLPAW  660
MEQMYIEQEQ MVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022764990.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A061FL100.0A0A061FL10_THECC; Zinc finger family protein
STRINGEOY177610.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein