PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0550.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 108aa    MW: 12179.7 Da    PI: 8.3188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.13.8e-1536105272
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                           Yn+YA + GF +rk+ s +s+ ng+i+++++vC+keg+++   +   ++++ +   r+gC a++++ +++
  Kaladp0058s0550.1.p  36 AYNHYAARRGFGIRKHFSARSRYNGHIIRKEYVCNKEGFKNVVPQI-IDHKKCQRDARIGCLANIEIGQKS 105
                          5****************************************99998.888999999**********98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1336105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDLENTDNTG VGDASCETVT GSLGKYFDTM EEVYDAYNHY AARRGFGIRK HFSARSRYNG  60
HIIRKEYVCN KEGFKNVVPQ IIDHKKCQRD ARIGCLANIE IGQKSEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.19e-12FAR1-related sequence 12