PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0058s0463.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 355aa MW: 38053.9 Da PI: 9.0109 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.1e-39 | 41 | 102 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k+++++cprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Kaladp0058s0463.1.p 41 KDQIVNCPRCNSVNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNRRSSS 102 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-28 | 36 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-33 | 42 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDDSSTQWPQ GIGVVKVVDH HQNAGSVDQQ QKRTTVGRPQ KDQIVNCPRC NSVNTKFCYY 60 NNYSLSQPRY FCKTCRRYWT AGGSLRNVPV GGGSRKNRRS SSSSAAAAQS SSQVQGVAKL 120 SSPSSSSLHH QGHDLKLSFP PHPTTHDDIH HHYSNNTNPT FITKPNFSID QFSCGKLLLA 180 HLPNPNSSTN MTPLLPSMGL FKNPAVAVGN DGSRETTMII PPDHQHAISN SSSASIFRSV 240 GFPPIHQDQL LFKPGSINFS LDGFGGDGDG YAASSLQLGV QQQNNDGSTA TGARLLFPFN 300 QENLNKQQAQ SAAAVAPASR DDAQFDHQQN RASSVQGDGS GAGFWTGMLG GGSW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0058s0463.1.p |