PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0340.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 614aa    MW: 68582.9 Da    PI: 5.3373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-17112157147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +grW+ eEd +l ++v++lG+ +W++Ia+ m  gR +kqc++rw++ 
  Kaladp0058s0340.1.p 112 KGRWSHEEDRQLTELVNELGTTQWSSIAKNMK-GRVGKQCRERWLNQ 157
                          79*****************************9.***********996 PP
2Myb_DNA-binding537.7e-17164206145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r +W++eEd++l+ a+k+lG++ W+ I ++++ gRt++ +k++w+
  Kaladp0058s0340.1.p 164 REAWSAEEDQILIAAHKELGTK-WSEITKRLP-GRTENAVKNYWN 206
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.737107158IPR017930Myb domain
SuperFamilySSF466895.03E-28111205IPR009057Homeodomain-like
SMARTSM007176.7E-14111160IPR001005SANT/Myb domain
PfamPF002493.1E-16112157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-24113165IPR009057Homeodomain-like
CDDcd001672.88E-13114156No hitNo description
PROSITE profilePS5129425.399159213IPR017930Myb domain
SMARTSM007179.7E-16163211IPR001005SANT/Myb domain
PfamPF002499.7E-15164206IPR001005SANT/Myb domain
CDDcd001678.88E-13166209No hitNo description
Gene3DG3DSA:1.10.10.608.6E-21166211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEPENEGLFP LDSIMHICID QAQPVYNHSK QETIDHDRSD SIQSMIVQQQ ITDQINAADG  60
LLCVTGHLAT NNRDQEMTKV ASSSFDNEKS TKAQLTKRAT RIKSEVSASG VKGRWSHEED  120
RQLTELVNEL GTTQWSSIAK NMKGRVGKQC RERWLNQLMP DIKREAWSAE EDQILIAAHK  180
ELGTKWSEIT KRLPGRTENA VKNYWNATKR RQEAKRKTMA WKHRNSGLLQ NYIKDLSTTE  240
RPSPSSSTNS DNFTVSNLLS GQGSLVSEDF SGFGSSGETF FQNCIRSFPP KRSSPPSSFN  300
SYNVGNINFC NNLPSSPNFN PSDGFKANGS SKEIFFDRIF PPTRLSRTSS FNRENVGDID  360
IPGNTIVYSQ PSDQEDVPSG GFVGDGRKMK MLSPTMTSFC PPSSLNITNF DNTYIYNKNA  420
ILGLTSEQNK VSFGGFVSDE EIKESFSQND INSSFPRVKP YKECSTNRNS TNNVNLLCNT  480
ASYCLSSIDS NAYSAAFDGD GKKRETFFED DSKSLSHPKW SFPLCSLDSY SIGDVSFYDK  540
AVTYELPTGQ KNDPFEGFTN GGNKMKMQAG DSDGIYDLKT WFEDFESIRE LTTLMGGADQ  600
DKDMNSLADM TYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-391112126107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-48myb domain protein 98