PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0058s0175.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 442aa MW: 47147.7 Da PI: 7.4646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0058s0175.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.5e-13	47	72	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++rtG+C yG+rC+F+H+p Kaladp0058s0175.1.p 47 DEADCRYYLRTGFCGYGERCRFNHPP 72 6799********************97 PP
2	zf-CCCH	37.3	4.7e-12	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+ tGtC++G++Ck++H++ Kaladp0058s0175.1.p 97 QPVCKYFMMTGTCRFGSSCKYHHPR 121 689********************96 PP
3	zf-CCCH	22.6	1.8e-07	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +t +Ck+G +CkF+H++ Kaladp0058s0175.1.p 140 GEKECSYYIKTCHCKFGVTCKFHHPQ 165 7899********************97 PP
4	zf-CCCH	40.1	6e-13	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0058s0175.1.p 305 PGQPECQYYMKTGDCKYGSSCRYHHPP 331 5789*********************97 PP
5	zf-CCCH	27.4	5.7e-09	351	374	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C +fa++G CkyG Ck+ H+ Kaladp0058s0175.1.p 351 APPCIYFAQYGVCKYGYACKYDHS 374 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.5E-6	45	72	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.751	45	73	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-10	47	72	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-7	48	74	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-6	51	71	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-7	94	121	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.333	94	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.23E-6	95	122	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-9	97	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-6	99	121	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.95	138	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.169	138	166	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-7	304	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.389	304	332	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-10	306	331	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	309	332	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-6	310	332	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	346	374	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.46	348	376	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	348	375	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-6	351	374	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEGYVHGRNP GAGGSRSQSD QGGEGYAEES TWRLGFGGQE SYPERPDEAD CRYYLRTGFC 60 GYGERCRFNH PPDRTTVVGV LGLGGGEYSE YPQRVGQPVC KYFMMTGTCR FGSSCKYHHP 120 RQGGGTLVSL NYLGYPLRPG EKECSYYIKT CHCKFGVTCK FHHPQPSNIH VTTATPGQGI 180 PPGSAPGLYP QVQPASISAA QPYGVMPGNW QVARPPTMFP GPYIQGPYAS MLVPHGMVPV 240 PEWGTFSAHV SPALPSQPTA ASSPLHGITQ LSPSAPEYTG LYSSVSPSVS GSSSSQKESG 300 LPERPGQPEC QYYMKTGDCK YGSSCRYHHP PELIRPETIS EPANLPIRPG APPCIYFAQY 360 GVCKYGYACK YDHSSRTLCY SPSASSLTDM PEAPVAVGSS TGTVAASSSS SDLHQEIAAL 420 SIKDSSPHPT PTPTPIASSA S*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEGYVHGRNP GAGGSRSQSD QGGEGYAEES TWRLGFGGQE SYPERPDEAD CRYYLRTGFC  60
GYGERCRFNH PPDRTTVVGV LGLGGGEYSE YPQRVGQPVC KYFMMTGTCR FGSSCKYHHP  120
RQGGGTLVSL NYLGYPLRPG EKECSYYIKT CHCKFGVTCK FHHPQPSNIH VTTATPGQGI  180
PPGSAPGLYP QVQPASISAA QPYGVMPGNW QVARPPTMFP GPYIQGPYAS MLVPHGMVPV  240
PEWGTFSAHV SPALPSQPTA ASSPLHGITQ LSPSAPEYTG LYSSVSPSVS GSSSSQKESG  300
LPERPGQPEC QYYMKTGDCK YGSSCRYHHP PELIRPETIS EPANLPIRPG APPCIYFAQY  360
GVCKYGYACK YDHSSRTLCY SPSASSLTDM PEAPVAVGSS TGTVAASSSS SDLHQEIAAL  420
SIKDSSPHPT PTPTPIASSA S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634959.1	1e-158	zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	1e-122	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A2R6PJX8	1e-152	A0A2R6PJX8_ACTCH; Zinc finger CCCH domain-containing protein
STRING	XP_009631342.1	1e-151	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-118	C3H family protein

Link Out ? help Back to Top
Phytozome	Kaladp0058s0175.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]