PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0058s0115.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23439.9 Da PI: 8.8524 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.7e-37 | 23 | 120 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkCa++C+lapyfp+e++++f +hklFG+sn+lk lk++p+ r++am s++++Aear dPv G+++v+ +l +q+e Kaladp0058s0115.1.p 23 ACAACKYQRRKCAPGCPLAPYFPSERASEFMSAHKLFGVSNILKALKKVPPGARDAAMISIMFHAEARRADPVGGCYAVVESLVKQIEVY 112 7***************************************************************************************** PP DUF260 91 kaelallk 98 +ael+++ Kaladp0058s0115.1.p 113 QAELDHVM 120 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.952 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-36 | 23 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MNSNLKIPDN YSRSSALTSQ SQACAACKYQ RRKCAPGCPL APYFPSERAS EFMSAHKLFG 60 VSNILKALKK VPPGARDAAM ISIMFHAEAR RADPVGGCYA VVESLVKQIE VYQAELDHVM 120 REVYAFRALA AAQAEPRLVP GHVPRADVSV NNVGCQIKLE KQSSSMADEK QFYRTVETTP 180 FDGKGAEACL VRLGENWKPA FAAHDVGLKI FTNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-27 | 24 | 126 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-27 | 24 | 126 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453880.1 | 8e-42 | PREDICTED: LOB domain-containing protein 22-like | ||||
Refseq | XP_016700669.1 | 8e-42 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 2e-38 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A0D2VJ03 | 2e-40 | A0A0D2VJ03_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KIZ9 | 2e-40 | A0A1U8KIZ9_GOSHI; LOB domain-containing protein 22-like | ||||
TrEMBL | A0A2P5QCU5 | 2e-40 | A0A2P5QCU5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G064500.1 | 3e-41 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 9e-41 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0058s0115.1.p |
Publications ? help Back to Top | |||
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