PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0057s0097.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 669aa    MW: 71254.3 Da    PI: 6.9281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0057s0097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16441487455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Kaladp0057s0097.1.p 441 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 487
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.18E-17433491No hitNo description
Gene3DG3DSA:4.10.280.107.8E-21434495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-21434497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-14441487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MPLPEFYSLA KGKHRSAQQS AAACPAEPSS LPGSDFVELV WENGQVVMQG QSSRGTKSTD  60
NTASFVDLPP QSSRFRDKGL AKGENSDAGK LLGMMDPVLS DFHMSVPSEL DDHDDMVPWL  120
SYHMDEPVQH NYGSDFFTEL SGVTANNLSN HPTNVSSEPR RSSGVRAMPV TQMNQFPSLH  180
GQCPFPSFRQ KVSNANTNCV NNAAQNLFCG DSAPKRYSSF GHPSVKVQAQ DPVQQLPSSS  240
IMNFSHFSRP AAMVKSSLDS VRATPELSVA EKLDGKDKGS VLTGVKPADP SLVASISGQR  300
VDNAGFKSQP VVLSAVDGSK LSQSRPVEMS NPADHFGHVG CQDSRTIGAS TKQAAAVAPI  360
GNKAAGNVEK IAEPVVASSV CSGNSVDRAS NDPTYGLKRK NRESEDSEYP SEDAEEESVG  420
IKKAATNRVG SGSKRSRAAE VHNLSERRRR DRINEKMRAL QELIPNCNKV DKASMLDEAI  480
EYLKTLQLQV QMMSMGSGLC MPPMMLPHAA HLPRFSPMGV GMGMGMGMGY GLGMLDNTPS  540
SPLIQMPSVP GPRFPMAPVP GLGSLNVAPM TNLPMYGFHG QGVPMPMSHA PVTSYPAGSP  600
VRPLMDLNAL SAVLPVGNLA SSAQASQPKT PLASTDDHHL PTTSKAVEPS TTTVDVVPVR  660
EATQHNES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445450ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659764.11e-153PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_021639568.11e-153transcription factor PIF3-like isoform X6
STRINGVIT_14s0060g00260.t011e-153(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-70phytochrome interacting factor 3