PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0057s0089.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 125aa    MW: 14260.9 Da    PI: 11.7856
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0057s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-1375114342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                          ie+   r+vt+ kRr+++ KK eE+ +L + +++++ifs+
  Kaladp0057s0089.1.p  75 IEDLGGRKVTYKKRRETLVKKMEEITTLSGLQACLVIFSE 114
                          6677789********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-631120IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.61565114IPR002100Transcription factor, MADS-box
CDDcd001202.10E-1166117No hitNo description
SuperFamilySSF554552.09E-1270116IPR002100Transcription factor, MADS-box
PfamPF003196.1E-1275114IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRTRWIGEGR LRKRDVSSAR VSLFVKMQQK TMRRKTSVVG AESLTNQRVK RVKRAKHKFL  60
LHQPTMKGGK QMGLIEDLGG RKVTYKKRRE TLVKKMEEIT TLSGLQACLV IFSEFEEGGR  120
AVVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-11AGAMOUS-like 87