PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0056s0121.4.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 446aa MW: 49061.1 Da PI: 8.7881

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0056s0121.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	140	182	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kaladp0056s0121.4.p 140 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 182 5889*************************98888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-6	137	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-8	139	183	No hit	No description
PROSITE profile	PS50217	9.197	139	183	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.2E-8	140	182	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.55E-7	141	184	No hit	No description
CDD	cd14708	9.66E-22	141	192	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.8E-32	221	296	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MFPAWPMRFQ TQQRGSSRSG GDESTDSGSA LNTTFSSKGG GGGADQAQFD PESPISKKPA 60 ASSSFDNRQP QQQQLQLHHQ QAVVGEMMTG DHSNSTRTGV VATMPGPGGL QNQQPSSSSA 120 KPISEKKKGA GSTSERILDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQD 180 LQRTRSQGYF MGAGGAGASI SSGAAIFDME YARWLDDDLR HMADLRTAVQ AHLSDGDLRV 240 IVDSHLSHYD EIFQLKAVAA KTDVFHLITG MWATPAERCF LWMGGFRPSE LIKIVMPQVD 300 PLTEQQVLAI YSLQHSSQQA EEALSQGLDQ LQQSLVDTIA GGPVIIDGMH QMATALGKLS 360 NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLAVGEYY GRLRALSSLW ASRPRETMMS 420 DDNSCQTTTD LQMVQHSQNH HFSNF*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MFPAWPMRFQ TQQRGSSRSG GDESTDSGSA LNTTFSSKGG GGGADQAQFD PESPISKKPA  60
ASSSFDNRQP QQQQLQLHHQ QAVVGEMMTG DHSNSTRTGV VATMPGPGGL QNQQPSSSSA  120
KPISEKKKGA GSTSERILDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQD  180
LQRTRSQGYF MGAGGAGASI SSGAAIFDME YARWLDDDLR HMADLRTAVQ AHLSDGDLRV  240
IVDSHLSHYD EIFQLKAVAA KTDVFHLITG MWATPAERCF LWMGGFRPSE LIKIVMPQVD  300
PLTEQQVLAI YSLQHSSQQA EEALSQGLDQ LQQSLVDTIA GGPVIIDGMH QMATALGKLS  360
NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLAVGEYY GRLRALSSLW ASRPRETMMS  420
DDNSCQTTTD LQMVQHSQNH HFSNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464906.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1Q3D847	0.0	A0A1Q3D847_CEPFO; BZIP_1 domain-containing protein/DOG1 domain-containing protein
STRING	XP_006424250.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-168	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0056s0121.4.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]