PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0056s0121.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 543aa MW: 59343.2 Da PI: 7.3094

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0056s0121.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	236	278	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kaladp0056s0121.1.p 236 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 278 5889*************************98888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-5	233	293	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	235	280	No hit	No description
PROSITE profile	PS50217	9.197	235	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.0E-8	236	278	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.75E-7	237	281	No hit	No description
CDD	cd14708	2.67E-21	237	289	No hit	No description
PROSITE pattern	PS00036	0	240	255	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-32	318	393	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MANHHSRVVG SGLSDSSGPS NHHMSPYASL LHQQHQHPNG VAHHAGSSAS FINQEGSAFD 60 FGELEEAIVM QGAAHFRDDE AKASLLFSGR PAATLEMFPA WPMRFQTQQR GSSRSGGDES 120 TDSGSALNTT FSSKGGGGGA DQAQFDPESP ISKKPAASSS FDNRQPQQQQ LQLHHQQAVV 180 GEMMTGDHSN STRTGVVATM PGPGGLQNQQ PSSSSAKPIS EKKKGAGSTS ERILDAKTLR 240 RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQDLQRT RSQQGYFMGA GGAGASISSG 300 AAIFDMEYAR WLDDDLRHMA DLRTAVQAHL SDGDLRVIVD SHLSHYDEIF QLKAVAAKTD 360 VFHLITGMWA TPAERCFLWM GGFRPSELIK IVMPQVDPLT EQQVLAIYSL QHSSQQAEEA 420 LSQGLDQLQQ SLVDTIAGGP VIIDGMHQMA TALGKLSNLE GFVRQADNLR QQTLHQLRRI 480 LTVRQAARCF LAVGEYYGRL RALSSLWASR PRETMMSDDN SCQTTTDLQM VQHSQNHHFS 540 NF*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MANHHSRVVG SGLSDSSGPS NHHMSPYASL LHQQHQHPNG VAHHAGSSAS FINQEGSAFD  60
FGELEEAIVM QGAAHFRDDE AKASLLFSGR PAATLEMFPA WPMRFQTQQR GSSRSGGDES  120
TDSGSALNTT FSSKGGGGGA DQAQFDPESP ISKKPAASSS FDNRQPQQQQ LQLHHQQAVV  180
GEMMTGDHSN STRTGVVATM PGPGGLQNQQ PSSSSAKPIS EKKKGAGSTS ERILDAKTLR  240
RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQDLQRT RSQQGYFMGA GGAGASISSG  300
AAIFDMEYAR WLDDDLRHMA DLRTAVQAHL SDGDLRVIVD SHLSHYDEIF QLKAVAAKTD  360
VFHLITGMWA TPAERCFLWM GGFRPSELIK IVMPQVDPLT EQQVLAIYSL QHSSQQAEEA  420
LSQGLDQLQQ SLVDTIAGGP VIIDGMHQMA TALGKLSNLE GFVRQADNLR QQTLHQLRRI  480
LTVRQAARCF LAVGEYYGRL RALSSLWASR PRETMMSDDN SCQTTTDLQM VQHSQNHHFS  540
NF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464906.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2K1Z8W2	0.0	A0A2K1Z8W2_POPTR; Uncharacterized protein
STRING	EMJ06243	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-164	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0056s0121.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]