PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0055s0395.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 366aa MW: 43251.7 Da PI: 6.0428

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0055s0395.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.7e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kkv+++++el +vik++d+yk+ePwdL++ ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg Kaladp0055s0395.1.p 7 VPPGFRFHPTDEELVDYYLRKKVNSRPIEL-DVIKDIDLYKIEPWDLQElcRLGTeDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 95 69**************************.9***********954544442556*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++ k+el+g++ktLvfykgrap+g+k+dW+mheyrle Kaladp0055s0395.1.p 96 RDKAIYL-KQELIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ***.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.107	7	156	IPR003441	NAC domain
Pfam	PF02365	6.4E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MNTFSQVPPG FRFHPTDEEL VDYYLRKKVN SRPIELDVIK DIDLYKIEPW DLQELCRLGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YLKQELIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLESDEN GSPQEEGWAV CRVFKKKMTT VRRMNEHESP CWFDDQVSYM 180 PNLDNSPNQT ISYQQRHPWY PCKTEADQHH HQPHHQYHPR MHYNQNPHDH FLHLPHLDAP 240 NKPNPNNMSF DNNAMMLGPF EDHHMQHLGS HEHGHSLYQY NNAHDQQTMA TTDWKMLDKY 300 VASQLSHEDL ISDENNNDDY SNAENEIFHL SGDHEGLHEE DDTIVSDPMQ HDLEHQSACP 360 IDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MNTFSQVPPG FRFHPTDEEL VDYYLRKKVN SRPIELDVIK DIDLYKIEPW DLQELCRLGT  60
EDQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YLKQELIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLESDEN GSPQEEGWAV CRVFKKKMTT VRRMNEHESP CWFDDQVSYM  180
PNLDNSPNQT ISYQQRHPWY PCKTEADQHH HQPHHQYHPR MHYNQNPHDH FLHLPHLDAP  240
NKPNPNNMSF DNNAMMLGPF EDHHMQHLGS HEHGHSLYQY NNAHDQQTMA TTDWKMLDKY  300
VASQLSHEDL ISDENNNDDY SNAENEIFHL SGDHEGLHEE DDTIVSDPMQ HDLEHQSACP  360
IDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	7	160	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	5e-49	7	160	20	172	NAC domain-containing protein 19
3swm_B	5e-49	7	160	20	172	NAC domain-containing protein 19
3swm_C	5e-49	7	160	20	172	NAC domain-containing protein 19
3swm_D	5e-49	7	160	20	172	NAC domain-containing protein 19
3swp_A	5e-49	7	160	20	172	NAC domain-containing protein 19
3swp_B	5e-49	7	160	20	172	NAC domain-containing protein 19
3swp_C	5e-49	7	160	20	172	NAC domain-containing protein 19
3swp_D	5e-49	7	160	20	172	NAC domain-containing protein 19
4dul_A	4e-49	7	160	17	169	NAC domain-containing protein 19
4dul_B	4e-49	7	160	17	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038408.2	1e-147	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-127	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1R3JTM0	1e-149	A0A1R3JTM0_9ROSI; No apical meristem (NAM) protein
STRING	EOY22909	1e-147	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-111	NAC 007

Link Out ? help Back to Top
Phytozome	Kaladp0055s0395.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]