PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0055s0108.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 964aa MW: 105850 Da PI: 5.7572

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0055s0108.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.9e-29	623	674	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl+ l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ Kaladp0055s0108.1.p 623 AEKTVSLQILQQYFAGSLKDAARSLGVCPTTLKRICRQHGISRWPSRKIKKV 674 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	613	694	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	626	674	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-21	859	949	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.5E-21	864	945	No hit	No description
SMART	SM00666	1.8E-20	865	948	IPR000270	PB1 domain
PROSITE profile	PS51745	19.798	865	948	IPR000270	PB1 domain
CDD	cd06407	3.54E-39	866	945	No hit	No description
Pfam	PF00564	6.6E-16	866	945	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MDDDAATPNT ILPAISMDSD FMNELLLEGC WVETADGDEH NSSLSPPTTS VPLANSSSSL 60 PDFEAPGNCK DSVPDKDTPK ELTETSVPPR KRALRYSQVA DPAGTETQDW GTIQKLTSSG 120 KSESYSLDTS EANKRIWIGP KTNVGTFPSV QERLMSAIKY LSESTRDRNI LIQIWVPVKS 180 GNKHVLTTND QPYSYDPNSL SLAQYRNVSK NYQFPAEENS RQSAGMPGRV FLGQMPEWTP 240 DVRCFRQEEY PRIAFAQQLN VQGSLALPIF EQGSGSCLGV VEIVTTCQKI NYRPELETVC 300 RALEAFQLRS SEITGLQNSK ILNDSYVAAS PQINEFLTYT CKAHNLPLAQ TWAPCMQHRK 360 GTGENVTQCM STVDDAYYVG EQNFIGFHEA CCEQHLLGDQ GIVGKAFTAN QLCFAPDITT 420 YSKADYPLSH HAILFGLCAA VAVRVRSIFT GSADFVLEFF LPVSCRSFED QQQIIGSLLN 480 ILRTCQSLFT VTDKDLHGDS SALPETVHES FNDNATSKSD ANPLKKASQE CSFWIANTKG 540 GQYKGKGISI SPDKAKEEPH EEFKLTTSWD DTEDESQLVF EDFDLLQQGS KEAEAGGGVS 600 SFRGDHHHPS GSRKSSGKRR TKAEKTVSLQ ILQQYFAGSL KDAARSLGVC PTTLKRICRQ 660 HGISRWPSRK IKKVGHSLMK LQLVMDSVQG ADGSIQISSF YSKFPELGSP NVSGTSSHSV 720 AKLSDRLIQL NHQQEEASMN PNDDSAHINP QLETGFLSPA GTTSKSPSSS CSQKSTSSLC 780 YSTGAKQGPL MLNPLSSVDA LFGESSDNVT KQTCSDAELL QASNQDETKL LGRSQSHKSL 840 PEQPPTEMLP PWPNTTGRVL RDNGAFRLKV SFGEVKVRFS LQHAWAFTDL QGEIAKRFNI 900 DDISKLHLKY LDDDCEWVLL TCDADLEECL DVHKATQSHT IKLCVLHAPH TNLGTSFGSS 960 GLS*

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MDDDAATPNT ILPAISMDSD FMNELLLEGC WVETADGDEH NSSLSPPTTS VPLANSSSSL  60
PDFEAPGNCK DSVPDKDTPK ELTETSVPPR KRALRYSQVA DPAGTETQDW GTIQKLTSSG  120
KSESYSLDTS EANKRIWIGP KTNVGTFPSV QERLMSAIKY LSESTRDRNI LIQIWVPVKS  180
GNKHVLTTND QPYSYDPNSL SLAQYRNVSK NYQFPAEENS RQSAGMPGRV FLGQMPEWTP  240
DVRCFRQEEY PRIAFAQQLN VQGSLALPIF EQGSGSCLGV VEIVTTCQKI NYRPELETVC  300
RALEAFQLRS SEITGLQNSK ILNDSYVAAS PQINEFLTYT CKAHNLPLAQ TWAPCMQHRK  360
GTGENVTQCM STVDDAYYVG EQNFIGFHEA CCEQHLLGDQ GIVGKAFTAN QLCFAPDITT  420
YSKADYPLSH HAILFGLCAA VAVRVRSIFT GSADFVLEFF LPVSCRSFED QQQIIGSLLN  480
ILRTCQSLFT VTDKDLHGDS SALPETVHES FNDNATSKSD ANPLKKASQE CSFWIANTKG  540
GQYKGKGISI SPDKAKEEPH EEFKLTTSWD DTEDESQLVF EDFDLLQQGS KEAEAGGGVS  600
SFRGDHHHPS GSRKSSGKRR TKAEKTVSLQ ILQQYFAGSL KDAARSLGVC PTTLKRICRQ  660
HGISRWPSRK IKKVGHSLMK LQLVMDSVQG ADGSIQISSF YSKFPELGSP NVSGTSSHSV  720
AKLSDRLIQL NHQQEEASMN PNDDSAHINP QLETGFLSPA GTTSKSPSSS CSQKSTSSLC  780
YSTGAKQGPL MLNPLSSVDA LFGESSDNVT KQTCSDAELL QASNQDETKL LGRSQSHKSL  840
PEQPPTEMLP PWPNTTGRVL RDNGAFRLKV SFGEVKVRFS LQHAWAFTDL QGEIAKRFNI  900
DDISKLHLKY LDDDCEWVLL TCDADLEECL DVHKATQSHT IKLCVLHAPH TNLGTSFGSS  960
GLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645880.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645886.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645896.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A438JSZ8	0.0	A0A438JSZ8_VITVI; Protein NLP2
TrEMBL	F6I0S7	0.0	F6I0S7_VITVI; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0055s0108.1.p